miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19661 5' -60.9 NC_004686.1 + 7106 0.66 0.423682
Target:  5'- gUGAUGGcguUUGGCUCGCGCUcucccUCGCUg -3'
miRNA:   3'- aACUGCCu--GACCGGGCGUGGc----AGCGG- -5'
19661 5' -60.9 NC_004686.1 + 3752 0.66 0.405607
Target:  5'- -cGGCGGACUGGUacgacgaGCugCGUgaaagCGCUg -3'
miRNA:   3'- aaCUGCCUGACCGgg-----CGugGCA-----GCGG- -5'
19661 5' -60.9 NC_004686.1 + 30079 0.66 0.405607
Target:  5'- -aGAgGGACcguuccaGGCCCGUACuCGUgGCa -3'
miRNA:   3'- aaCUgCCUGa------CCGGGCGUG-GCAgCGg -5'
19661 5' -60.9 NC_004686.1 + 7288 0.67 0.388023
Target:  5'- -gGGCGG-C-GGCCagauuccgUGCGCCGUcCGCCg -3'
miRNA:   3'- aaCUGCCuGaCCGG--------GCGUGGCA-GCGG- -5'
19661 5' -60.9 NC_004686.1 + 44371 0.67 0.346314
Target:  5'- -cGACGGugUGGUUgCGgAuCCGuUCGCCg -3'
miRNA:   3'- aaCUGCCugACCGG-GCgU-GGC-AGCGG- -5'
19661 5' -60.9 NC_004686.1 + 16404 0.68 0.338367
Target:  5'- -cGGCGcaacgcgguucGACUGcaCCC-CACCGUCGCCg -3'
miRNA:   3'- aaCUGC-----------CUGACc-GGGcGUGGCAGCGG- -5'
19661 5' -60.9 NC_004686.1 + 39242 0.68 0.330554
Target:  5'- gUGGCGuGGCUGaCCCGCAUgGguuggacCGCCa -3'
miRNA:   3'- aACUGC-CUGACcGGGCGUGgCa------GCGG- -5'
19661 5' -60.9 NC_004686.1 + 54854 0.68 0.315328
Target:  5'- --cGCGGuaaGGaCCCGCGCCGgccCGCCa -3'
miRNA:   3'- aacUGCCugaCC-GGGCGUGGCa--GCGG- -5'
19661 5' -60.9 NC_004686.1 + 13272 0.68 0.307916
Target:  5'- -cGAccCGGACUGGUaugagaagCCGCACgUGUCGaCCg -3'
miRNA:   3'- aaCU--GCCUGACCG--------GGCGUG-GCAGC-GG- -5'
19661 5' -60.9 NC_004686.1 + 38174 0.69 0.266241
Target:  5'- -aGACGcaGCaUGaacGCCCGCACCGUCGaCCu -3'
miRNA:   3'- aaCUGCc-UG-AC---CGGGCGUGGCAGC-GG- -5'
19661 5' -60.9 NC_004686.1 + 37802 0.7 0.251519
Target:  5'- -cGACGaGcccGCUGGCuuGUucugagauaggcggGCCGUCGCCc -3'
miRNA:   3'- aaCUGC-C---UGACCGggCG--------------UGGCAGCGG- -5'
19661 5' -60.9 NC_004686.1 + 33568 0.7 0.243498
Target:  5'- -gGugGGGCUGuuaggcccgguguucGCCCGCACCcUUGCg -3'
miRNA:   3'- aaCugCCUGAC---------------CGGGCGUGGcAGCGg -5'
19661 5' -60.9 NC_004686.1 + 31174 0.71 0.19619
Target:  5'- gUUGAaagcCGGACacUGGUCCGCgccauuucgugcgGCCGUCGUCg -3'
miRNA:   3'- -AACU----GCCUG--ACCGGGCG-------------UGGCAGCGG- -5'
19661 5' -60.9 NC_004686.1 + 47880 0.73 0.151391
Target:  5'- uUUGGCuGGGCcugagGGCCUGC-CCGUgGCCa -3'
miRNA:   3'- -AACUG-CCUGa----CCGGGCGuGGCAgCGG- -5'
19661 5' -60.9 NC_004686.1 + 37364 0.73 0.147422
Target:  5'- aUUGGCGGuCUcGUCgCGCACCGcCGCCg -3'
miRNA:   3'- -AACUGCCuGAcCGG-GCGUGGCaGCGG- -5'
19661 5' -60.9 NC_004686.1 + 38638 0.74 0.135351
Target:  5'- gUUGAUGGACUGaGCCCGCcccaACUGgccaaacagcugCGCCa -3'
miRNA:   3'- -AACUGCCUGAC-CGGGCG----UGGCa-----------GCGG- -5'
19661 5' -60.9 NC_004686.1 + 47568 0.77 0.083365
Target:  5'- -cGcCGG-CUGGCCCGCGCUGUCGgUCg -3'
miRNA:   3'- aaCuGCCuGACCGGGCGUGGCAGC-GG- -5'
19661 5' -60.9 NC_004686.1 + 2871 0.78 0.063158
Target:  5'- -cGACGGAgCUGGCCCGUuCgCGUgGCCg -3'
miRNA:   3'- aaCUGCCU-GACCGGGCGuG-GCAgCGG- -5'
19661 5' -60.9 NC_004686.1 + 14614 1.09 0.00028
Target:  5'- uUUGACGGACUGGCCCGCACCGUCGCCg -3'
miRNA:   3'- -AACUGCCUGACCGGGCGUGGCAGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.