miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19662 5' -57.5 NC_004686.1 + 19270 0.66 0.608738
Target:  5'- aGU-UGCGGUGUgaggGCgGuGCGGGUGGuGa -3'
miRNA:   3'- gCAuGCGCCACA----UGgC-CGUCCACCuC- -5'
19662 5' -57.5 NC_004686.1 + 41469 0.66 0.607664
Target:  5'- gCGUACG-GGUGUuccuugugggucaACC-GCAGGuUGGGGa -3'
miRNA:   3'- -GCAUGCgCCACA-------------UGGcCGUCC-ACCUC- -5'
19662 5' -57.5 NC_004686.1 + 10453 0.66 0.598014
Target:  5'- ----gGCGGUGacggGCCGGCcuuGGGUGcGGGa -3'
miRNA:   3'- gcaugCGCCACa---UGGCCG---UCCAC-CUC- -5'
19662 5' -57.5 NC_004686.1 + 32481 0.66 0.598014
Target:  5'- uGUuCaCGGUGUGCCcguagucccGGUAGGUGGuGg -3'
miRNA:   3'- gCAuGcGCCACAUGG---------CCGUCCACCuC- -5'
19662 5' -57.5 NC_004686.1 + 19401 0.67 0.576659
Target:  5'- aGUG-GUGGUGguaucgcGCCGGguGGUGGcGg -3'
miRNA:   3'- gCAUgCGCCACa------UGGCCguCCACCuC- -5'
19662 5' -57.5 NC_004686.1 + 19185 0.67 0.555477
Target:  5'- gGUGCGcCGG-GUGCUGGUgguacGGGUGuGGGc -3'
miRNA:   3'- gCAUGC-GCCaCAUGGCCG-----UCCAC-CUC- -5'
19662 5' -57.5 NC_004686.1 + 37019 0.68 0.483512
Target:  5'- aCGggcuCGCGGUGUugGgUGGCuGGGUGGAu -3'
miRNA:   3'- -GCau--GCGCCACA--UgGCCG-UCCACCUc -5'
19662 5' -57.5 NC_004686.1 + 905 0.68 0.483512
Target:  5'- -uUGCGCGGcagGCCGGCAaaacGUGGGGu -3'
miRNA:   3'- gcAUGCGCCacaUGGCCGUc---CACCUC- -5'
19662 5' -57.5 NC_004686.1 + 49662 0.68 0.483512
Target:  5'- ---cUGUGGUGUGCCaGGUucguccuuGGGUGGGGu -3'
miRNA:   3'- gcauGCGCCACAUGG-CCG--------UCCACCUC- -5'
19662 5' -57.5 NC_004686.1 + 28979 0.69 0.43401
Target:  5'- aCGUugGUGGUGUGucaggggugugugUCGGCgugGGGUGGuGc -3'
miRNA:   3'- -GCAugCGCCACAU-------------GGCCG---UCCACCuC- -5'
19662 5' -57.5 NC_004686.1 + 7089 0.7 0.398207
Target:  5'- gGUuuGCGGUGUcgaGCCGGCAGGg---- -3'
miRNA:   3'- gCAugCGCCACA---UGGCCGUCCaccuc -5'
19662 5' -57.5 NC_004686.1 + 1999 0.7 0.380596
Target:  5'- uGUGCGgGG-GUcgcGCCGGCAGGaucguacuucgGGAGg -3'
miRNA:   3'- gCAUGCgCCaCA---UGGCCGUCCa----------CCUC- -5'
19662 5' -57.5 NC_004686.1 + 175 0.82 0.067187
Target:  5'- gGUugGCGG-GUGCCgGGCGGGUGGGc -3'
miRNA:   3'- gCAugCGCCaCAUGG-CCGUCCACCUc -5'
19662 5' -57.5 NC_004686.1 + 14746 1.09 0.000685
Target:  5'- cCGUACGCGGUGUACCGGCAGGUGGAGa -3'
miRNA:   3'- -GCAUGCGCCACAUGGCCGUCCACCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.