miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19663 3' -54 NC_004686.1 + 19280 0.66 0.801081
Target:  5'- aCUCGAgaaCCUC-GUUCGccagccacUCCGGAUCCg -3'
miRNA:   3'- -GAGCU---GGAGuCAAGCcc------AGGUCUAGG- -5'
19663 3' -54 NC_004686.1 + 22326 0.67 0.740885
Target:  5'- -aCGGCCccgcCGGUaauggCGGGUUCGGAUCg -3'
miRNA:   3'- gaGCUGGa---GUCAa----GCCCAGGUCUAGg -5'
19663 3' -54 NC_004686.1 + 7803 0.68 0.709165
Target:  5'- --gGACCUCGGUguagUCGGaGUCgAGuuUCCa -3'
miRNA:   3'- gagCUGGAGUCA----AGCC-CAGgUCu-AGG- -5'
19663 3' -54 NC_004686.1 + 30406 0.68 0.687624
Target:  5'- aCUCGGa-UguGUUCGGGUCCAuGAgaacCCg -3'
miRNA:   3'- -GAGCUggAguCAAGCCCAGGU-CUa---GG- -5'
19663 3' -54 NC_004686.1 + 42498 0.68 0.687624
Target:  5'- uCUUGACCcCAcGggCGGGaCCAGcgCCg -3'
miRNA:   3'- -GAGCUGGaGU-CaaGCCCaGGUCuaGG- -5'
19663 3' -54 NC_004686.1 + 40958 0.68 0.67677
Target:  5'- uUCGAUCUUg---CGGGcgcgguccaUCCAGAUCCg -3'
miRNA:   3'- gAGCUGGAGucaaGCCC---------AGGUCUAGG- -5'
19663 3' -54 NC_004686.1 + 2815 0.69 0.665873
Target:  5'- gUCGACC---GUUCcGGUgCCGGAUCCg -3'
miRNA:   3'- gAGCUGGaguCAAGcCCA-GGUCUAGG- -5'
19663 3' -54 NC_004686.1 + 18934 0.7 0.60019
Target:  5'- gUCGAUacaGGUUCGGGUUCuGAUCa -3'
miRNA:   3'- gAGCUGgagUCAAGCCCAGGuCUAGg -5'
19663 3' -54 NC_004686.1 + 6896 0.7 0.567585
Target:  5'- gUCGcACgUCGGUccgUCGGGUUCGGA-CCa -3'
miRNA:   3'- gAGC-UGgAGUCA---AGCCCAGGUCUaGG- -5'
19663 3' -54 NC_004686.1 + 32613 0.71 0.535446
Target:  5'- gCUUGGCCUCuucgAGUUUggugacgaGGGUCCGGuaGUCCu -3'
miRNA:   3'- -GAGCUGGAG----UCAAG--------CCCAGGUC--UAGG- -5'
19663 3' -54 NC_004686.1 + 41578 0.71 0.524871
Target:  5'- aCUCGGCgaCGGUgCGGG-CCAG-UCCg -3'
miRNA:   3'- -GAGCUGgaGUCAaGCCCaGGUCuAGG- -5'
19663 3' -54 NC_004686.1 + 44914 0.73 0.433977
Target:  5'- gUUGuuuCCUCGGUUCGGGUCgGGcgauguUCCu -3'
miRNA:   3'- gAGCu--GGAGUCAAGCCCAGgUCu-----AGG- -5'
19663 3' -54 NC_004686.1 + 15941 1.12 0.000997
Target:  5'- cCUCGACCUCAGUUCGGGUCCAGAUCCu -3'
miRNA:   3'- -GAGCUGGAGUCAAGCCCAGGUCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.