miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19663 5' -57.3 NC_004686.1 + 1460 0.66 0.618212
Target:  5'- -cGGuucGUUCGGcgcauUCCCGGAaGGCGCGUUg -3'
miRNA:   3'- gaCC---UAGGCU-----AGGGCUUgCCGCGCAA- -5'
19663 5' -57.3 NC_004686.1 + 36319 0.66 0.618212
Target:  5'- gCUGGucgCCGAggUUGAGCGGCuGCGUc -3'
miRNA:   3'- -GACCua-GGCUagGGCUUGCCG-CGCAa -5'
19663 5' -57.3 NC_004686.1 + 27268 0.66 0.585789
Target:  5'- gUGGAUCCGAacaaUCCGAAUGGUcCGa- -3'
miRNA:   3'- gACCUAGGCUa---GGGCUUGCCGcGCaa -5'
19663 5' -57.3 NC_004686.1 + 25546 0.66 0.585789
Target:  5'- -cGGAUCCGAagUuuGAGCGuuggaugcGCGCGUUc -3'
miRNA:   3'- gaCCUAGGCUa-GggCUUGC--------CGCGCAA- -5'
19663 5' -57.3 NC_004686.1 + 31400 0.66 0.585789
Target:  5'- -aGGAgUCCGGUUCCGAGagcccCGGCuauGCGUUu -3'
miRNA:   3'- gaCCU-AGGCUAGGGCUU-----GCCG---CGCAA- -5'
19663 5' -57.3 NC_004686.1 + 40230 0.67 0.575045
Target:  5'- -gGGAUCgGAUCCaGAAgGGCaGCGa- -3'
miRNA:   3'- gaCCUAGgCUAGGgCUUgCCG-CGCaa -5'
19663 5' -57.3 NC_004686.1 + 28243 0.67 0.564348
Target:  5'- gUGGAgcgCCGAcuUCUgGAACGGUcucgGCGUUg -3'
miRNA:   3'- gACCUa--GGCU--AGGgCUUGCCG----CGCAA- -5'
19663 5' -57.3 NC_004686.1 + 35272 0.67 0.553703
Target:  5'- uUGGAguugUCGGUUCCGGcguCGGCGUGg- -3'
miRNA:   3'- gACCUa---GGCUAGGGCUu--GCCGCGCaa -5'
19663 5' -57.3 NC_004686.1 + 22596 0.67 0.532601
Target:  5'- -gGGGUCCGGgaagcgugCCCGcAAgGGUGCGg- -3'
miRNA:   3'- gaCCUAGGCUa-------GGGC-UUgCCGCGCaa -5'
19663 5' -57.3 NC_004686.1 + 29259 0.69 0.413705
Target:  5'- aUGGGUCCGugCCUGGAUGGgGCGc- -3'
miRNA:   3'- gACCUAGGCuaGGGCUUGCCgCGCaa -5'
19663 5' -57.3 NC_004686.1 + 19841 0.7 0.395503
Target:  5'- aUGGAUCCG-UCUUuGACGGCGCa-- -3'
miRNA:   3'- gACCUAGGCuAGGGcUUGCCGCGcaa -5'
19663 5' -57.3 NC_004686.1 + 28566 0.72 0.297679
Target:  5'- -cGGGcgaucgccgUCUGAUCCCGAcCGGCaGCGUUg -3'
miRNA:   3'- gaCCU---------AGGCUAGGGCUuGCCG-CGCAA- -5'
19663 5' -57.3 NC_004686.1 + 6131 0.72 0.276353
Target:  5'- -cGGAggcgaagCUGAUCCUGAuCGGCGCGg- -3'
miRNA:   3'- gaCCUa------GGCUAGGGCUuGCCGCGCaa -5'
19663 5' -57.3 NC_004686.1 + 15977 1.04 0.001424
Target:  5'- uCUGGAUCCGAUCCCGAACGGCGCGUUu -3'
miRNA:   3'- -GACCUAGGCUAGGGCUUGCCGCGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.