miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19664 3' -58.1 NC_004686.1 + 41390 0.66 0.573941
Target:  5'- gCUGUGC-CCGCCcACGuuGACcUGGAc -3'
miRNA:   3'- -GACACGcGGCGGaUGCcgUUGcACCU- -5'
19664 3' -58.1 NC_004686.1 + 905 0.66 0.563285
Target:  5'- --uUGCGCgGCaggcCGGCAaaACGUGGGg -3'
miRNA:   3'- gacACGCGgCGgau-GCCGU--UGCACCU- -5'
19664 3' -58.1 NC_004686.1 + 17859 0.67 0.510949
Target:  5'- aUGUGgcgaccuacaCGCCGagUGCGGCGgAUGUGGAg -3'
miRNA:   3'- gACAC----------GCGGCggAUGCCGU-UGCACCU- -5'
19664 3' -58.1 NC_004686.1 + 39760 0.67 0.500715
Target:  5'- ---gGCGCCuCCUacacggacgccGCGGCGACgGUGGGg -3'
miRNA:   3'- gacaCGCGGcGGA-----------UGCCGUUG-CACCU- -5'
19664 3' -58.1 NC_004686.1 + 10905 0.67 0.490573
Target:  5'- -gGUacaCGCCGCCcACaacaacuccgGGCAGCGUGGGu -3'
miRNA:   3'- gaCAc--GCGGCGGaUG----------CCGUUGCACCU- -5'
19664 3' -58.1 NC_004686.1 + 34731 0.67 0.470582
Target:  5'- -aGUuCGCCGgCUACGGCAACcgcaaGGAa -3'
miRNA:   3'- gaCAcGCGGCgGAUGCCGUUGca---CCU- -5'
19664 3' -58.1 NC_004686.1 + 3725 0.69 0.404143
Target:  5'- -cGUGgagcgaaGCCGCCaugGCGGCGGCGgcGGAc -3'
miRNA:   3'- gaCACg------CGGCGGa--UGCCGUUGCa-CCU- -5'
19664 3' -58.1 NC_004686.1 + 4194 0.69 0.377538
Target:  5'- -cGUGC-CCGCgUGCGGCAA--UGGAu -3'
miRNA:   3'- gaCACGcGGCGgAUGCCGUUgcACCU- -5'
19664 3' -58.1 NC_004686.1 + 25818 0.72 0.243735
Target:  5'- gCUGUGCGCCgGCCcGCGGC--CG-GGAc -3'
miRNA:   3'- -GACACGCGG-CGGaUGCCGuuGCaCCU- -5'
19664 3' -58.1 NC_004686.1 + 36142 0.72 0.237593
Target:  5'- gCUGgaagGCGuuGCCUACGGgc-CGUGGGa -3'
miRNA:   3'- -GACa---CGCggCGGAUGCCguuGCACCU- -5'
19664 3' -58.1 NC_004686.1 + 47305 0.75 0.155941
Target:  5'- -aGUGCGCCGCCUACGacc-CGUGGu -3'
miRNA:   3'- gaCACGCGGCGGAUGCcguuGCACCu -5'
19664 3' -58.1 NC_004686.1 + 16105 1.08 0.000619
Target:  5'- gCUGUGCGCCGCCUACGGCAACGUGGAc -3'
miRNA:   3'- -GACACGCGGCGGAUGCCGUUGCACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.