miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19667 3' -47.2 NC_004686.1 + 27657 0.66 0.992444
Target:  5'- -gAUCAUCACCGAaaacucgugggucGGugGUCcg-ACCg -3'
miRNA:   3'- ugUAGUAGUGGCU-------------UCugUAGuagUGG- -5'
19667 3' -47.2 NC_004686.1 + 55496 0.66 0.992208
Target:  5'- aAC-UCAcCGCCGGAugagguacgcgaucGGCAUCGUCgGCCa -3'
miRNA:   3'- -UGuAGUaGUGGCUU--------------CUGUAGUAG-UGG- -5'
19667 3' -47.2 NC_004686.1 + 23635 0.66 0.991336
Target:  5'- ---aCAcCACCGguGGCGUCucuGUCACCc -3'
miRNA:   3'- uguaGUaGUGGCuuCUGUAG---UAGUGG- -5'
19667 3' -47.2 NC_004686.1 + 2093 0.66 0.990805
Target:  5'- cGCGUCcUCACCGuAAGACGauuccacgaacggCAaCGCCa -3'
miRNA:   3'- -UGUAGuAGUGGC-UUCUGUa------------GUaGUGG- -5'
19667 3' -47.2 NC_004686.1 + 19741 0.66 0.98996
Target:  5'- ----aGUCuCCGAAGACGUUugcCACCa -3'
miRNA:   3'- uguagUAGuGGCUUCUGUAGua-GUGG- -5'
19667 3' -47.2 NC_004686.1 + 50144 0.66 0.988418
Target:  5'- cACAUCAUC-CCG--GACAcCA-CACCa -3'
miRNA:   3'- -UGUAGUAGuGGCuuCUGUaGUaGUGG- -5'
19667 3' -47.2 NC_004686.1 + 31212 0.66 0.988418
Target:  5'- cCGUCGUCGCUGcGGGCGcgCAggUUGCCg -3'
miRNA:   3'- uGUAGUAGUGGCuUCUGUa-GU--AGUGG- -5'
19667 3' -47.2 NC_004686.1 + 14629 0.66 0.988418
Target:  5'- cGCAcCGUCGCCGAGuucgccgacGACuUCAUCGauuCCa -3'
miRNA:   3'- -UGUaGUAGUGGCUU---------CUGuAGUAGU---GG- -5'
19667 3' -47.2 NC_004686.1 + 55217 0.66 0.986698
Target:  5'- cCAUCggCGCCGucaACAUCGUCucccGCCa -3'
miRNA:   3'- uGUAGuaGUGGCuucUGUAGUAG----UGG- -5'
19667 3' -47.2 NC_004686.1 + 20336 0.66 0.986698
Target:  5'- uCAUCAUCAgccucguuUUGAGGGCGgugCGUgGCCg -3'
miRNA:   3'- uGUAGUAGU--------GGCUUCUGUa--GUAgUGG- -5'
19667 3' -47.2 NC_004686.1 + 6314 0.66 0.986698
Target:  5'- -gAUCGuuUCGCCGcGGcCuUCGUCGCCg -3'
miRNA:   3'- ugUAGU--AGUGGCuUCuGuAGUAGUGG- -5'
19667 3' -47.2 NC_004686.1 + 52836 0.66 0.986698
Target:  5'- cGCAUCGaucgacuuccacUCAUCGggGAUcUCGUCgAUCg -3'
miRNA:   3'- -UGUAGU------------AGUGGCuuCUGuAGUAG-UGG- -5'
19667 3' -47.2 NC_004686.1 + 7986 0.67 0.984789
Target:  5'- gACGUgGacuUCACCGAcGGGCAUCGcaagaUCACg -3'
miRNA:   3'- -UGUAgU---AGUGGCU-UCUGUAGU-----AGUGg -5'
19667 3' -47.2 NC_004686.1 + 12639 0.67 0.984789
Target:  5'- ---cUAUCACUGAGGAC-UCccCACCa -3'
miRNA:   3'- uguaGUAGUGGCUUCUGuAGuaGUGG- -5'
19667 3' -47.2 NC_004686.1 + 24577 0.67 0.984789
Target:  5'- uACAcCGUCACUGAcgaguuGGGCcgCAggCACCu -3'
miRNA:   3'- -UGUaGUAGUGGCU------UCUGuaGUa-GUGG- -5'
19667 3' -47.2 NC_004686.1 + 33219 0.67 0.982678
Target:  5'- -gAUCGUUGCUGGacaAGAUcgCAUCACUu -3'
miRNA:   3'- ugUAGUAGUGGCU---UCUGuaGUAGUGG- -5'
19667 3' -47.2 NC_004686.1 + 26232 0.67 0.980353
Target:  5'- cACAUCG-CACCuGAcGGCAcCGUCACa -3'
miRNA:   3'- -UGUAGUaGUGG-CUuCUGUaGUAGUGg -5'
19667 3' -47.2 NC_004686.1 + 5251 0.67 0.980353
Target:  5'- gGCAUCAacccgcUCACCGGugcGGCucuGUCGgguUCGCCg -3'
miRNA:   3'- -UGUAGU------AGUGGCUu--CUG---UAGU---AGUGG- -5'
19667 3' -47.2 NC_004686.1 + 43046 0.67 0.980353
Target:  5'- aGCGU--UCGCCGAAGGCuggcuuguUCGUCAaacCCa -3'
miRNA:   3'- -UGUAguAGUGGCUUCUGu-------AGUAGU---GG- -5'
19667 3' -47.2 NC_004686.1 + 50054 0.68 0.975017
Target:  5'- cGCAUCAccgCGCCGAucAGG-AUCAgcuUCGCCu -3'
miRNA:   3'- -UGUAGUa--GUGGCU--UCUgUAGU---AGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.