miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19667 3' -47.2 NC_004686.1 + 43046 0.67 0.980353
Target:  5'- aGCGU--UCGCCGAAGGCuggcuuguUCGUCAaacCCa -3'
miRNA:   3'- -UGUAguAGUGGCUUCUGu-------AGUAGU---GG- -5'
19667 3' -47.2 NC_004686.1 + 44247 0.7 0.926307
Target:  5'- aACGcUCcacUCGCCGggG-CAgugUCAUCACCa -3'
miRNA:   3'- -UGU-AGu--AGUGGCuuCuGU---AGUAGUGG- -5'
19667 3' -47.2 NC_004686.1 + 17393 0.69 0.943112
Target:  5'- gACAUCAUCAacCUGAucaacGAUAUUuuGUCGCCg -3'
miRNA:   3'- -UGUAGUAGU--GGCUu----CUGUAG--UAGUGG- -5'
19667 3' -47.2 NC_004686.1 + 22472 0.69 0.9528
Target:  5'- cCAUCAUCAgccccgccCCGgcGGCGaugacCGUCACCg -3'
miRNA:   3'- uGUAGUAGU--------GGCuuCUGUa----GUAGUGG- -5'
19667 3' -47.2 NC_004686.1 + 23579 0.69 0.9572
Target:  5'- uGCAUCGUcCACCaccuGGGCuggUGUCACCg -3'
miRNA:   3'- -UGUAGUA-GUGGcu--UCUGua-GUAGUGG- -5'
19667 3' -47.2 NC_004686.1 + 44846 0.68 0.960511
Target:  5'- uACAUCGUCACCGGuGGAaccgaacCACCg -3'
miRNA:   3'- -UGUAGUAGUGGCU-UCUguagua-GUGG- -5'
19667 3' -47.2 NC_004686.1 + 51966 0.68 0.971984
Target:  5'- uGCcUCGaCGCCGucGACAUCAUcCGCg -3'
miRNA:   3'- -UGuAGUaGUGGCuuCUGUAGUA-GUGg -5'
19667 3' -47.2 NC_004686.1 + 26232 0.67 0.980353
Target:  5'- cACAUCG-CACCuGAcGGCAcCGUCACa -3'
miRNA:   3'- -UGUAGUaGUGG-CUuCUGUaGUAGUGg -5'
19667 3' -47.2 NC_004686.1 + 5251 0.67 0.980353
Target:  5'- gGCAUCAacccgcUCACCGGugcGGCucuGUCGgguUCGCCg -3'
miRNA:   3'- -UGUAGU------AGUGGCUu--CUG---UAGU---AGUGG- -5'
19667 3' -47.2 NC_004686.1 + 55804 0.7 0.926307
Target:  5'- aACA-CcgCAUCGAAGcCAcCAUCACCa -3'
miRNA:   3'- -UGUaGuaGUGGCUUCuGUaGUAGUGG- -5'
19667 3' -47.2 NC_004686.1 + 16562 0.7 0.926307
Target:  5'- uCAcCAcCACCGgcGGCG-CAUCACCa -3'
miRNA:   3'- uGUaGUaGUGGCuuCUGUaGUAGUGG- -5'
19667 3' -47.2 NC_004686.1 + 29290 0.7 0.924474
Target:  5'- aACcUCAUCAUUGaAAGGCAUucccucaugcagaaCAUCACCa -3'
miRNA:   3'- -UGuAGUAGUGGC-UUCUGUA--------------GUAGUGG- -5'
19667 3' -47.2 NC_004686.1 + 38408 0.82 0.341986
Target:  5'- uGC-UCAUCGCCGcGGGCAUCAUCgGCCc -3'
miRNA:   3'- -UGuAGUAGUGGCuUCUGUAGUAG-UGG- -5'
19667 3' -47.2 NC_004686.1 + 12654 0.76 0.659795
Target:  5'- uACGUCuUCACCGAGGACcaaAUgGCCg -3'
miRNA:   3'- -UGUAGuAGUGGCUUCUGuagUAgUGG- -5'
19667 3' -47.2 NC_004686.1 + 38489 0.75 0.705715
Target:  5'- cCGUCAUCGaauCCGAAGGCA---UCACCg -3'
miRNA:   3'- uGUAGUAGU---GGCUUCUGUaguAGUGG- -5'
19667 3' -47.2 NC_004686.1 + 30838 0.74 0.728247
Target:  5'- aACGUCcaCACCcacGGCAUCAUCGCCg -3'
miRNA:   3'- -UGUAGuaGUGGcuuCUGUAGUAGUGG- -5'
19667 3' -47.2 NC_004686.1 + 55127 0.72 0.850782
Target:  5'- ---cCAUCACCGAAcacGACucCAUCGCCg -3'
miRNA:   3'- uguaGUAGUGGCUU---CUGuaGUAGUGG- -5'
19667 3' -47.2 NC_004686.1 + 35057 0.71 0.876456
Target:  5'- ---cCGUCACCGAGGcugGCGUCugGUCGCUg -3'
miRNA:   3'- uguaGUAGUGGCUUC---UGUAG--UAGUGG- -5'
19667 3' -47.2 NC_004686.1 + 22669 0.71 0.892184
Target:  5'- cGCAUCAUCgaACCGgcGGCAgcguUCAUCg -3'
miRNA:   3'- -UGUAGUAG--UGGCuuCUGUagu-AGUGG- -5'
19667 3' -47.2 NC_004686.1 + 25845 0.71 0.899612
Target:  5'- -gAUCAacgguuUCGCCGAcgucgguGACAUCGUCGCg -3'
miRNA:   3'- ugUAGU------AGUGGCUu------CUGUAGUAGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.