Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19668 | 3' | -64 | NC_004686.1 | + | 22356 | 1.1 | 0.000139 |
Target: 5'- cGGCGGGCGGCAGCGGUGACGGCUCCAa -3' miRNA: 3'- -CCGCCCGCCGUCGCCACUGCCGAGGU- -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 21893 | 0.81 | 0.023326 |
Target: 5'- cGGCGgcGGCGGUGGCGGUGGCGGUgCCu -3' miRNA: 3'- -CCGC--CCGCCGUCGCCACUGCCGaGGu -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 21836 | 0.78 | 0.042939 |
Target: 5'- cGGCGGcGCgGGC-GCGGgcGGCGGCUCCGg -3' miRNA: 3'- -CCGCC-CG-CCGuCGCCa-CUGCCGAGGU- -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 2751 | 0.72 | 0.108163 |
Target: 5'- uGGUGGGUGGUguggucacAGCGGUGAgGGUcgcCCAa -3' miRNA: 3'- -CCGCCCGCCG--------UCGCCACUgCCGa--GGU- -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 19421 | 0.72 | 0.123486 |
Target: 5'- gGGUGguGGCGGUaauGGUGGUGAcCGGUUCCu -3' miRNA: 3'- -CCGC--CCGCCG---UCGCCACU-GCCGAGGu -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 37830 | 0.72 | 0.126784 |
Target: 5'- aGGCGGGCcgucgccccauGCGGCGGgacGACGGC-CCu -3' miRNA: 3'- -CCGCCCGc----------CGUCGCCa--CUGCCGaGGu -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 22249 | 0.72 | 0.126784 |
Target: 5'- gGGCGcuGGCGGUaagGGCGGcGGCGGCaagcugUCCAa -3' miRNA: 3'- -CCGC--CCGCCG---UCGCCaCUGCCG------AGGU- -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 17647 | 0.71 | 0.137171 |
Target: 5'- uGCGGGCaagucgcGCAGCaGUGACGGUUCgGg -3' miRNA: 3'- cCGCCCGc------CGUCGcCACUGCCGAGgU- -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 18275 | 0.71 | 0.148336 |
Target: 5'- uGGUGGGUcagcacGGCAGCGG-GGCGaGcCUCCc -3' miRNA: 3'- -CCGCCCG------CCGUCGCCaCUGC-C-GAGGu -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 1025 | 0.7 | 0.160321 |
Target: 5'- uGGUGGGCGuCGGCGGcUGcCGGUUCgAg -3' miRNA: 3'- -CCGCCCGCcGUCGCC-ACuGCCGAGgU- -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 21982 | 0.7 | 0.179479 |
Target: 5'- cGGCGGcGCuGGCGGUgccaaggcguauuccGGUGACGGCa--- -3' miRNA: 3'- -CCGCC-CG-CCGUCG---------------CCACUGCCGaggu -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 36660 | 0.69 | 0.185046 |
Target: 5'- cGGCGGcGuCGGCGGCGucguaucaacCGGCUCCGg -3' miRNA: 3'- -CCGCC-C-GCCGUCGCcacu------GCCGAGGU- -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 19375 | 0.69 | 0.20369 |
Target: 5'- uGGCGGGCGGgcaucagaaggugccCAGUGGUGGUGGUaUCGc -3' miRNA: 3'- -CCGCCCGCC---------------GUCGCCACUGCCGaGGU- -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 3743 | 0.69 | 0.206778 |
Target: 5'- uGGC-GGCGGCGGCGGacugguacGACGaGCUgCGu -3' miRNA: 3'- -CCGcCCGCCGUCGCCa-------CUGC-CGAgGU- -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 11928 | 0.69 | 0.206778 |
Target: 5'- cGGUGGGCaacccguccagGGCAGUgauGGUGcCGcGCUCCc -3' miRNA: 3'- -CCGCCCG-----------CCGUCG---CCACuGC-CGAGGu -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 3431 | 0.68 | 0.222833 |
Target: 5'- uGCGGGUaugaagcaguuGGCGGCGGUGccgUGGCUUg- -3' miRNA: 3'- cCGCCCG-----------CCGUCGCCACu--GCCGAGgu -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 10428 | 0.68 | 0.228416 |
Target: 5'- gGGCGucguuGGUGGUggugaauucGGCGGUGACGGg-CCGg -3' miRNA: 3'- -CCGC-----CCGCCG---------UCGCCACUGCCgaGGU- -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 178 | 0.68 | 0.239936 |
Target: 5'- uGGCGGGUgccgGGCgGGUGGgcGACGGUgCCGu -3' miRNA: 3'- -CCGCCCG----CCG-UCGCCa-CUGCCGaGGU- -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 19211 | 0.67 | 0.245876 |
Target: 5'- uGUGGGCGGCAaUGGUGGCGaCaCCGu -3' miRNA: 3'- cCGCCCGCCGUcGCCACUGCcGaGGU- -5' |
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19668 | 3' | -64 | NC_004686.1 | + | 16893 | 0.67 | 0.251938 |
Target: 5'- cGCGGGCacgcugcacgGuGCGGUGGUGGCaGC-CCAg -3' miRNA: 3'- cCGCCCG----------C-CGUCGCCACUGcCGaGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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