Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19668 | 5' | -57.5 | NC_004686.1 | + | 22390 | 1.05 | 0.001089 |
Target: 5'- cACCGGCACCGAUGGCUACAACCGCAUc -3' miRNA: 3'- -UGGCCGUGGCUACCGAUGUUGGCGUA- -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 2798 | 0.74 | 0.188505 |
Target: 5'- -gCGGCACCGGUGGUgguguCGACCGUu- -3' miRNA: 3'- ugGCCGUGGCUACCGau---GUUGGCGua -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 12475 | 0.69 | 0.364927 |
Target: 5'- cGCCGGgACCGggGGCgccUACccCCGCAc -3' miRNA: 3'- -UGGCCgUGGCuaCCG---AUGuuGGCGUa -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 13465 | 0.69 | 0.373608 |
Target: 5'- -gCGGCGCgGAUGGUgccguGCCGCAa -3' miRNA: 3'- ugGCCGUGgCUACCGaugu-UGGCGUa -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 5555 | 0.69 | 0.391383 |
Target: 5'- -gCGGC-CCGGaGGCUGUGACCGCGUc -3' miRNA: 3'- ugGCCGuGGCUaCCGAUGUUGGCGUA- -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 25095 | 0.69 | 0.397733 |
Target: 5'- uGCCGcgaggucgaacuacGCACCGAaaGGCcAUAGCCGCAUg -3' miRNA: 3'- -UGGC--------------CGUGGCUa-CCGaUGUUGGCGUA- -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 12626 | 0.69 | 0.400475 |
Target: 5'- -gCGGCGCUGGUGGCUAUcACUGa-- -3' miRNA: 3'- ugGCCGUGGCUACCGAUGuUGGCgua -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 36318 | 0.69 | 0.400475 |
Target: 5'- aGCUGGuCGCCGA-GGUUgaGCGGCUGCGUc -3' miRNA: 3'- -UGGCC-GUGGCUaCCGA--UGUUGGCGUA- -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 12147 | 0.69 | 0.400475 |
Target: 5'- uUCGGCGCCGgcGGUca-GGCCGCGg -3' miRNA: 3'- uGGCCGUGGCuaCCGaugUUGGCGUa -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 44167 | 0.68 | 0.419057 |
Target: 5'- uGCCGG-ACCGGgcaugGGUgaucucACAACCGCAUu -3' miRNA: 3'- -UGGCCgUGGCUa----CCGa-----UGUUGGCGUA- -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 44290 | 0.68 | 0.428543 |
Target: 5'- cACCGGCACCGAccGGCccaggagGCAgACCaGCGg -3' miRNA: 3'- -UGGCCGUGGCUa-CCGa------UGU-UGG-CGUa -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 54258 | 0.68 | 0.428543 |
Target: 5'- uACCGGCA---GUGGCUGgAugCGCAa -3' miRNA: 3'- -UGGCCGUggcUACCGAUgUugGCGUa -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 33630 | 0.68 | 0.428543 |
Target: 5'- gGCUGGcCGCCGGugaUGGUgaggGCGGCUGCGg -3' miRNA: 3'- -UGGCC-GUGGCU---ACCGa---UGUUGGCGUa -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 39804 | 0.68 | 0.435257 |
Target: 5'- aACCGcguuGCGCCGcaaguuccccggucGUGGCUGgGACCGCc- -3' miRNA: 3'- -UGGC----CGUGGC--------------UACCGAUgUUGGCGua -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 36684 | 0.68 | 0.447886 |
Target: 5'- aACCGGCuCCGGgguaGGC-GCAuccACCGCAc -3' miRNA: 3'- -UGGCCGuGGCUa---CCGaUGU---UGGCGUa -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 43663 | 0.68 | 0.457738 |
Target: 5'- uCCGGgguCACCGGcUGGCUgGCAGCCuGCGg -3' miRNA: 3'- uGGCC---GUGGCU-ACCGA-UGUUGG-CGUa -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 9572 | 0.68 | 0.464703 |
Target: 5'- gGCCGGUAUUGGUGuugcugcugcagguGCUACuGCCGCu- -3' miRNA: 3'- -UGGCCGUGGCUAC--------------CGAUGuUGGCGua -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 6177 | 0.68 | 0.467705 |
Target: 5'- aGCCGGauCCGGUGcuCUGCAAUCGCAa -3' miRNA: 3'- -UGGCCguGGCUACc-GAUGUUGGCGUa -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 51662 | 0.67 | 0.477782 |
Target: 5'- gUCGGUGCCGccgcagcggaAUGGCUugAacACCGCGa -3' miRNA: 3'- uGGCCGUGGC----------UACCGAugU--UGGCGUa -5' |
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19668 | 5' | -57.5 | NC_004686.1 | + | 10753 | 0.67 | 0.477782 |
Target: 5'- uGCCGGCACCcccgcGGCgcaAGCCGCc- -3' miRNA: 3'- -UGGCCGUGGcua--CCGaugUUGGCGua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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