miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19669 3' -57.3 NC_004686.1 + 17454 0.66 0.607935
Target:  5'- --aCGGUGuGCAGCCgcgcGAGguGUGGGAGa -3'
miRNA:   3'- gugGCCACcCGUCGGa---CUU--CACCUUC- -5'
19669 3' -57.3 NC_004686.1 + 828 0.66 0.564562
Target:  5'- cCACCGGacaGGUGGUa-GAGGUGGAAGc -3'
miRNA:   3'- -GUGGCCac-CCGUCGgaCUUCACCUUC- -5'
19669 3' -57.3 NC_004686.1 + 50948 0.67 0.543166
Target:  5'- gCACCGGUGaGCGGgUUGAugccGUGGAu- -3'
miRNA:   3'- -GUGGCCACcCGUCgGACUu---CACCUuc -5'
19669 3' -57.3 NC_004686.1 + 17873 0.67 0.532567
Target:  5'- aCGCCGaGUGcGGCGGaUgUGGAGUGGccGg -3'
miRNA:   3'- -GUGGC-CAC-CCGUC-GgACUUCACCuuC- -5'
19669 3' -57.3 NC_004686.1 + 22519 0.67 0.532567
Target:  5'- aCGCCGGcGGG-AGCaccgcaUGAAGcGGAAGg -3'
miRNA:   3'- -GUGGCCaCCCgUCGg-----ACUUCaCCUUC- -5'
19669 3' -57.3 NC_004686.1 + 21586 0.67 0.511601
Target:  5'- uCACUGG-GGGuCAGCCUGcgcuuGUGGuuGa -3'
miRNA:   3'- -GUGGCCaCCC-GUCGGACuu---CACCuuC- -5'
19669 3' -57.3 NC_004686.1 + 33576 0.68 0.450972
Target:  5'- cCACCGGUGauGGCGaucuGCCcgGcGGUGGggGu -3'
miRNA:   3'- -GUGGCCAC--CCGU----CGGa-CuUCACCuuC- -5'
19669 3' -57.3 NC_004686.1 + 2999 0.68 0.450972
Target:  5'- uGCCGGUGuGGCuugucaucGcCCUGAcuGGUGGAGa -3'
miRNA:   3'- gUGGCCAC-CCGu-------C-GGACU--UCACCUUc -5'
19669 3' -57.3 NC_004686.1 + 25769 0.68 0.450971
Target:  5'- aACUGGUuGaGCAGCC-GAAGUGGGGa -3'
miRNA:   3'- gUGGCCAcC-CGUCGGaCUUCACCUUc -5'
19669 3' -57.3 NC_004686.1 + 43670 0.69 0.412814
Target:  5'- uCACCGGcUGgcuGGCAGCCUGcGGcccaGGAGGu -3'
miRNA:   3'- -GUGGCC-AC---CCGUCGGACuUCa---CCUUC- -5'
19669 3' -57.3 NC_004686.1 + 45122 0.69 0.40359
Target:  5'- uCGCCGG-GGGCAGCCaUGAucagGGUGu--- -3'
miRNA:   3'- -GUGGCCaCCCGUCGG-ACU----UCACcuuc -5'
19669 3' -57.3 NC_004686.1 + 14052 0.7 0.35948
Target:  5'- cCGCUGGUcGGGcCGGCUUGAuaaguguguGGUGGAGu -3'
miRNA:   3'- -GUGGCCA-CCC-GUCGGACU---------UCACCUUc -5'
19669 3' -57.3 NC_004686.1 + 15462 0.7 0.351072
Target:  5'- uGCUGGUGGcGUGGCCUGGuaugcGUGGcGGa -3'
miRNA:   3'- gUGGCCACC-CGUCGGACUu----CACCuUC- -5'
19669 3' -57.3 NC_004686.1 + 22505 1.07 0.000818
Target:  5'- uCACCGGUGGGCAGCCUGAAGUGGAAGc -3'
miRNA:   3'- -GUGGCCACCCGUCGGACUUCACCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.