miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19669 5' -57.3 NC_004686.1 + 35149 0.66 0.62394
Target:  5'- aACGaUCCcacgCaacaacgACAaacacaucagaACCCGCCGCAGCa -3'
miRNA:   3'- gUGC-AGGa---Gga-----UGU-----------UGGGCGGCGUCG- -5'
19669 5' -57.3 NC_004686.1 + 35010 0.66 0.62394
Target:  5'- aACGUCUgCgCUGaaccagugcCAGCCC-CCGCGGCg -3'
miRNA:   3'- gUGCAGGaG-GAU---------GUUGGGcGGCGUCG- -5'
19669 5' -57.3 NC_004686.1 + 38958 0.66 0.61745
Target:  5'- gACGcCCUCCcGCAgauccucaggcagagAUCCGaauaaCGCAGCa -3'
miRNA:   3'- gUGCaGGAGGaUGU---------------UGGGCg----GCGUCG- -5'
19669 5' -57.3 NC_004686.1 + 522 0.66 0.613125
Target:  5'- uGCGUCgUCUUcgaguaccACAGCCCaGUCGguGUg -3'
miRNA:   3'- gUGCAGgAGGA--------UGUUGGG-CGGCguCG- -5'
19669 5' -57.3 NC_004686.1 + 54326 0.66 0.613125
Target:  5'- gACGUCCacCCUGCAGCaugcacucUCGCUGCAa- -3'
miRNA:   3'- gUGCAGGa-GGAUGUUG--------GGCGGCGUcg -5'
19669 5' -57.3 NC_004686.1 + 54193 0.66 0.613125
Target:  5'- gUACGaUCCUgCCggcGCGACCC-CCGCacAGCc -3'
miRNA:   3'- -GUGC-AGGA-GGa--UGUUGGGcGGCG--UCG- -5'
19669 5' -57.3 NC_004686.1 + 32341 0.66 0.602325
Target:  5'- gGCGUCCUUCaAC-GCCCGgUuCAGCa -3'
miRNA:   3'- gUGCAGGAGGaUGuUGGGCgGcGUCG- -5'
19669 5' -57.3 NC_004686.1 + 28049 0.66 0.602325
Target:  5'- gGCGUCCgUCgGCAucUCCGCCGUAGa -3'
miRNA:   3'- gUGCAGGaGGaUGUu-GGGCGGCGUCg -5'
19669 5' -57.3 NC_004686.1 + 9147 0.66 0.602325
Target:  5'- aGCGUcCCUCUgACAAgCCGCCgGCcGUg -3'
miRNA:   3'- gUGCA-GGAGGaUGUUgGGCGG-CGuCG- -5'
19669 5' -57.3 NC_004686.1 + 54973 0.67 0.559454
Target:  5'- aGCG-CCgCCUACAACCgCGCCaCcGCa -3'
miRNA:   3'- gUGCaGGaGGAUGUUGG-GCGGcGuCG- -5'
19669 5' -57.3 NC_004686.1 + 7506 0.67 0.548859
Target:  5'- -gUGUUCUCCUACGGCUgGUCaaacCAGCa -3'
miRNA:   3'- guGCAGGAGGAUGUUGGgCGGc---GUCG- -5'
19669 5' -57.3 NC_004686.1 + 45432 0.67 0.548859
Target:  5'- aCGCGUCCagg-GCGGCUugCGCCGCGGg -3'
miRNA:   3'- -GUGCAGGaggaUGUUGG--GCGGCGUCg -5'
19669 5' -57.3 NC_004686.1 + 29067 0.67 0.537277
Target:  5'- aCACGcCUUCCUGuucgagcUGGCUCGCCGUcgaGGCg -3'
miRNA:   3'- -GUGCaGGAGGAU-------GUUGGGCGGCG---UCG- -5'
19669 5' -57.3 NC_004686.1 + 20765 0.68 0.517478
Target:  5'- gUACGcCUUCCaACGGCCCuGCCGCu-- -3'
miRNA:   3'- -GUGCaGGAGGaUGUUGGG-CGGCGucg -5'
19669 5' -57.3 NC_004686.1 + 39723 0.69 0.4378
Target:  5'- aCAUGUCCUggCCcagGCGGCCCGCCuGCu-- -3'
miRNA:   3'- -GUGCAGGA--GGa--UGUUGGGCGG-CGucg -5'
19669 5' -57.3 NC_004686.1 + 46195 0.69 0.425518
Target:  5'- aAUGUCCUaCCUGCGgaucugagccggacACCCGgUGCAGa -3'
miRNA:   3'- gUGCAGGA-GGAUGU--------------UGGGCgGCGUCg -5'
19669 5' -57.3 NC_004686.1 + 51647 0.7 0.363931
Target:  5'- gACGUCC-CUgaagaggucgGugCCGCCGCAGCg -3'
miRNA:   3'- gUGCAGGaGGaug-------UugGGCGGCGUCG- -5'
19669 5' -57.3 NC_004686.1 + 23786 0.71 0.348091
Target:  5'- uUAUGUCCUUCUcgacGCAACCC-CCGCcgaugugAGCg -3'
miRNA:   3'- -GUGCAGGAGGA----UGUUGGGcGGCG-------UCG- -5'
19669 5' -57.3 NC_004686.1 + 47686 0.72 0.302093
Target:  5'- cCGCGUCCUgCUugAAUCgGCgcaaCGCGGCu -3'
miRNA:   3'- -GUGCAGGAgGAugUUGGgCG----GCGUCG- -5'
19669 5' -57.3 NC_004686.1 + 32367 0.72 0.302093
Target:  5'- gCACGUgcgCCUUCUcgGCucuccGCUCGCCGCGGCc -3'
miRNA:   3'- -GUGCA---GGAGGA--UGu----UGGGCGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.