miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1967 3' -59.3 NC_001347.2 + 225446 0.66 0.881362
Target:  5'- gGCAGagcuaccauauaaaaACGCAgGGGUUuaGCAGCuuccCCa -3'
miRNA:   3'- -CGUCg--------------UGCGUgCCCAGcgCGUCGu---GG- -5'
1967 3' -59.3 NC_001347.2 + 136289 0.66 0.880693
Target:  5'- cGCGGCccauGCccgGCACGGGgcUCGCGCucccuagguGCgGCCg -3'
miRNA:   3'- -CGUCG----UG---CGUGCCC--AGCGCGu--------CG-UGG- -5'
1967 3' -59.3 NC_001347.2 + 196155 0.66 0.880693
Target:  5'- gGCGGCccuguGC-CGCGGGUUGCccgucaAGUACCg -3'
miRNA:   3'- -CGUCG-----UGcGUGCCCAGCGcg----UCGUGG- -5'
1967 3' -59.3 NC_001347.2 + 44043 0.66 0.880023
Target:  5'- gGCAGCgguggugGCGCugGGGguggCGgcaGUGGUACUg -3'
miRNA:   3'- -CGUCG-------UGCGugCCCa---GCg--CGUCGUGG- -5'
1967 3' -59.3 NC_001347.2 + 18918 0.66 0.873895
Target:  5'- aCAGCAgCGCAUGGGgC-CGCAcGgACCu -3'
miRNA:   3'- cGUCGU-GCGUGCCCaGcGCGU-CgUGG- -5'
1967 3' -59.3 NC_001347.2 + 87246 0.66 0.873895
Target:  5'- cGguGCGagcaGUugGGGaugcggCGCGCcGUACCc -3'
miRNA:   3'- -CguCGUg---CGugCCCa-----GCGCGuCGUGG- -5'
1967 3' -59.3 NC_001347.2 + 163760 0.66 0.873895
Target:  5'- aGCGGUACGUu---GUCGCGCacAGUGCCc -3'
miRNA:   3'- -CGUCGUGCGugccCAGCGCG--UCGUGG- -5'
1967 3' -59.3 NC_001347.2 + 206708 0.66 0.873895
Target:  5'- -gGGC-CGCACGGagcgcgacGUCGagguagauguuUGCGGCGCCu -3'
miRNA:   3'- cgUCGuGCGUGCC--------CAGC-----------GCGUCGUGG- -5'
1967 3' -59.3 NC_001347.2 + 38295 0.66 0.873895
Target:  5'- -aGGCACGCAaa--UCGCGCccccgccggcGGCGCCg -3'
miRNA:   3'- cgUCGUGCGUgcccAGCGCG----------UCGUGG- -5'
1967 3' -59.3 NC_001347.2 + 63051 0.66 0.873895
Target:  5'- cCGGCgGCGuCAUGGGUgGCGgAGgACUg -3'
miRNA:   3'- cGUCG-UGC-GUGCCCAgCGCgUCgUGG- -5'
1967 3' -59.3 NC_001347.2 + 78674 0.66 0.873895
Target:  5'- gGCcGUGCGCAaGGcGcgCGaCGCGGCGCCc -3'
miRNA:   3'- -CGuCGUGCGUgCC-Ca-GC-GCGUCGUGG- -5'
1967 3' -59.3 NC_001347.2 + 2517 0.66 0.869721
Target:  5'- gGCAGUugGCuuuuuugcuacgucCGGGUCGCGgcgaGGCugagguCCu -3'
miRNA:   3'- -CGUCGugCGu-------------GCCCAGCGCg---UCGu-----GG- -5'
1967 3' -59.3 NC_001347.2 + 210000 0.66 0.866901
Target:  5'- --cGCAcCGC-CGGGUCGCGgucCGCCg -3'
miRNA:   3'- cguCGU-GCGuGCCCAGCGCgucGUGG- -5'
1967 3' -59.3 NC_001347.2 + 115441 0.66 0.866901
Target:  5'- aGCGGCagaaugccaagACGCAUggugagaaGGGUaCGCGUAGCcaauuCCa -3'
miRNA:   3'- -CGUCG-----------UGCGUG--------CCCA-GCGCGUCGu----GG- -5'
1967 3' -59.3 NC_001347.2 + 229078 0.66 0.866901
Target:  5'- uGUGGCugGCAUGa-UUGUGCGGCAUg -3'
miRNA:   3'- -CGUCGugCGUGCccAGCGCGUCGUGg -5'
1967 3' -59.3 NC_001347.2 + 175087 0.66 0.866901
Target:  5'- cGCGGCagGCGCACuuucuGG-CGCGCGGacuCCu -3'
miRNA:   3'- -CGUCG--UGCGUGc----CCaGCGCGUCgu-GG- -5'
1967 3' -59.3 NC_001347.2 + 153261 0.66 0.866901
Target:  5'- gGCGGUuCGC-CGuGGUUGUuggccgacGUAGCGCCg -3'
miRNA:   3'- -CGUCGuGCGuGC-CCAGCG--------CGUCGUGG- -5'
1967 3' -59.3 NC_001347.2 + 183820 0.66 0.866901
Target:  5'- cCAGCGCGUauACGGGgcuGgGCA-CGCCa -3'
miRNA:   3'- cGUCGUGCG--UGCCCag-CgCGUcGUGG- -5'
1967 3' -59.3 NC_001347.2 + 88651 0.66 0.866191
Target:  5'- gGCGGCcUGCGCaGcuUCGCGCauccacuGGCGCCg -3'
miRNA:   3'- -CGUCGuGCGUGcCc-AGCGCG-------UCGUGG- -5'
1967 3' -59.3 NC_001347.2 + 148835 0.66 0.859717
Target:  5'- -uGGCGCGagacccuggUGGGUCGCGUGGUgggACCu -3'
miRNA:   3'- cgUCGUGCgu-------GCCCAGCGCGUCG---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.