miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1967 5' -57 NC_001347.2 + 7905 0.65 0.935413
Target:  5'- gUGGCgGCGACAaggccgccugagcCGguagcuccuucuuuUCCCCAGguGGUg -3'
miRNA:   3'- aACCGgCGCUGU-------------GC--------------AGGGGUCuuUCG- -5'
1967 5' -57 NC_001347.2 + 165546 0.66 0.93445
Target:  5'- -gGGCCGCGagagcgcguGCACGgUCCggccgaaccgcgacuCCAGgcGGCg -3'
miRNA:   3'- aaCCGGCGC---------UGUGC-AGG---------------GGUCuuUCG- -5'
1967 5' -57 NC_001347.2 + 178226 0.66 0.932497
Target:  5'- gUUGGCUggaGCGACACuGcCCCCcguuGGAccagGAGCu -3'
miRNA:   3'- -AACCGG---CGCUGUG-CaGGGG----UCU----UUCG- -5'
1967 5' -57 NC_001347.2 + 131862 0.66 0.932497
Target:  5'- -cGGCCcgguGCGACggagggccccgACGUCCCCucucccGGAGGGg -3'
miRNA:   3'- aaCCGG----CGCUG-----------UGCAGGGG------UCUUUCg -5'
1967 5' -57 NC_001347.2 + 199621 0.66 0.922186
Target:  5'- --cGCCGcCGGCGcCGUUCUCGGgcAGCg -3'
miRNA:   3'- aacCGGC-GCUGU-GCAGGGGUCuuUCG- -5'
1967 5' -57 NC_001347.2 + 228570 0.66 0.916691
Target:  5'- cUGuGCCGCGGCAgCGUacgacgUUCCAGucAGCg -3'
miRNA:   3'- aAC-CGGCGCUGU-GCA------GGGGUCuuUCG- -5'
1967 5' -57 NC_001347.2 + 215331 0.66 0.916691
Target:  5'- -aGGCagcuCGGCACG-CCCCGGGGcguGCg -3'
miRNA:   3'- aaCCGgc--GCUGUGCaGGGGUCUUu--CG- -5'
1967 5' -57 NC_001347.2 + 74859 0.66 0.916691
Target:  5'- -aGGCCGCGcuGCACcaCCUCGGGGuggauGCg -3'
miRNA:   3'- aaCCGGCGC--UGUGcaGGGGUCUUu----CG- -5'
1967 5' -57 NC_001347.2 + 196457 0.66 0.916129
Target:  5'- -cGGCCgGCGACguggcccGCGUCCa-GGAcAGCg -3'
miRNA:   3'- aaCCGG-CGCUG-------UGCAGGggUCUuUCG- -5'
1967 5' -57 NC_001347.2 + 208823 0.66 0.91097
Target:  5'- cUGcGCCGCGcCGcCGUCCUCG--AAGCg -3'
miRNA:   3'- aAC-CGGCGCuGU-GCAGGGGUcuUUCG- -5'
1967 5' -57 NC_001347.2 + 1981 0.66 0.91097
Target:  5'- -cGGCgGgGACgACGUCCCgccagCGGcGAGCg -3'
miRNA:   3'- aaCCGgCgCUG-UGCAGGG-----GUCuUUCG- -5'
1967 5' -57 NC_001347.2 + 189023 0.67 0.905025
Target:  5'- cUGGCCGCGcgaacGCGCGUgggCCCUcaAGAAuccucaccuGGCu -3'
miRNA:   3'- aACCGGCGC-----UGUGCA---GGGG--UCUU---------UCG- -5'
1967 5' -57 NC_001347.2 + 274 0.67 0.904418
Target:  5'- gUGGCCucGCGGCcguuauuucccccGCgGUCCCCAG--GGCc -3'
miRNA:   3'- aACCGG--CGCUG-------------UG-CAGGGGUCuuUCG- -5'
1967 5' -57 NC_001347.2 + 229753 0.67 0.904418
Target:  5'- gUGGCCucGCGGCcguuauuucccccGCgGUCCCCAG--GGCc -3'
miRNA:   3'- aACCGG--CGCUG-------------UG-CAGGGGUCuuUCG- -5'
1967 5' -57 NC_001347.2 + 192949 0.67 0.901969
Target:  5'- aUGGCUauaaaaacccaaguaGCGGCGCG-CCCCGGcguucagucgcggcuGAGCg -3'
miRNA:   3'- aACCGG---------------CGCUGUGCaGGGGUCu--------------UUCG- -5'
1967 5' -57 NC_001347.2 + 149072 0.67 0.898858
Target:  5'- -aGGCUGCGugAgGUCauugCCAGcguGGGCg -3'
miRNA:   3'- aaCCGGCGCugUgCAGg---GGUCu--UUCG- -5'
1967 5' -57 NC_001347.2 + 144446 0.67 0.898858
Target:  5'- aUGGCaCGgGGgGCGacggCCCC-GAGGGCg -3'
miRNA:   3'- aACCG-GCgCUgUGCa---GGGGuCUUUCG- -5'
1967 5' -57 NC_001347.2 + 78685 0.67 0.896329
Target:  5'- -aGGCgCGCGACGCGgcgCCCUuccguccgcuGGCg -3'
miRNA:   3'- aaCCG-GCGCUGUGCa--GGGGucuu------UCG- -5'
1967 5' -57 NC_001347.2 + 67930 0.67 0.892471
Target:  5'- -gGGCCGgGACucaccguCGUUCUCGGAGgagggaGGCg -3'
miRNA:   3'- aaCCGGCgCUGu------GCAGGGGUCUU------UCG- -5'
1967 5' -57 NC_001347.2 + 77339 0.67 0.885868
Target:  5'- -aGGCCGUcaucGACAUuuUCCCCAcGGGGCa -3'
miRNA:   3'- aaCCGGCG----CUGUGc-AGGGGUcUUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.