miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19670 5' -61.3 NC_004686.1 + 48077 0.66 0.43507
Target:  5'- cCAGgUCACCUcaccgaucucugucaCCUGGCCCUCGGgGa -3'
miRNA:   3'- aGUCgAGUGGGc--------------GGAUUGGGGGCCgC- -5'
19670 5' -61.3 NC_004686.1 + 37964 0.66 0.434144
Target:  5'- cCuGCccgUCACCCGCaacGCCCCCauGGCu -3'
miRNA:   3'- aGuCG---AGUGGGCGgauUGGGGG--CCGc -5'
19670 5' -61.3 NC_004686.1 + 56020 0.66 0.434144
Target:  5'- --cGCcCACCCGCCcGGCacccgccaaCCCGGCc -3'
miRNA:   3'- aguCGaGUGGGCGGaUUGg--------GGGCCGc -5'
19670 5' -61.3 NC_004686.1 + 42505 0.66 0.434144
Target:  5'- uUCGGUccaCGCUgGCauuAUCCCCGGCGa -3'
miRNA:   3'- -AGUCGa--GUGGgCGgauUGGGGGCCGC- -5'
19670 5' -61.3 NC_004686.1 + 37917 0.66 0.41497
Target:  5'- -aGGCUCGCCCGCugccgugCUGACCCaCCa--- -3'
miRNA:   3'- agUCGAGUGGGCG-------GAUUGGG-GGccgc -5'
19670 5' -61.3 NC_004686.1 + 38428 0.66 0.406913
Target:  5'- aUCGGCcCcggACUCGCCgcACCCCacgcccaGGCGg -3'
miRNA:   3'- -AGUCGaG---UGGGCGGauUGGGGg------CCGC- -5'
19670 5' -61.3 NC_004686.1 + 22658 0.66 0.406913
Target:  5'- uUCGGCagGCCCGCaucAUCgaaCCGGCGg -3'
miRNA:   3'- -AGUCGagUGGGCGgauUGGg--GGCCGC- -5'
19670 5' -61.3 NC_004686.1 + 49797 0.66 0.398077
Target:  5'- aUCGGCUgACCCGCCagAACCgCaCC-GCa -3'
miRNA:   3'- -AGUCGAgUGGGCGGa-UUGG-G-GGcCGc -5'
19670 5' -61.3 NC_004686.1 + 52447 0.66 0.398077
Target:  5'- gCAGCUCGucguaccagUCCGCCgccGCCgCCaUGGCGg -3'
miRNA:   3'- aGUCGAGU---------GGGCGGau-UGG-GG-GCCGC- -5'
19670 5' -61.3 NC_004686.1 + 26603 0.67 0.372319
Target:  5'- -uGGCgagCACCCGCCgaucgAACCgcagCCCGGg- -3'
miRNA:   3'- agUCGa--GUGGGCGGa----UUGG----GGGCCgc -5'
19670 5' -61.3 NC_004686.1 + 37191 0.67 0.346919
Target:  5'- uUCGGCagaccagUCACCCGUCUcgguggguGACauuggUCCCGGCGc -3'
miRNA:   3'- -AGUCG-------AGUGGGCGGA--------UUG-----GGGGCCGC- -5'
19670 5' -61.3 NC_004686.1 + 51479 0.68 0.309355
Target:  5'- cUCGGCcucggCAUUCGCCU-GCUCCgCGGCGc -3'
miRNA:   3'- -AGUCGa----GUGGGCGGAuUGGGG-GCCGC- -5'
19670 5' -61.3 NC_004686.1 + 51896 0.69 0.281051
Target:  5'- aCAGCUCAUCgaCGCUc--UCCCCGGUGg -3'
miRNA:   3'- aGUCGAGUGG--GCGGauuGGGGGCCGC- -5'
19670 5' -61.3 NC_004686.1 + 39185 0.69 0.281051
Target:  5'- cCAGUccgCACCCaugauuacGCC-GACCCgCCGGCGg -3'
miRNA:   3'- aGUCGa--GUGGG--------CGGaUUGGG-GGCCGC- -5'
19670 5' -61.3 NC_004686.1 + 16977 0.7 0.242506
Target:  5'- aCAGagauucCUCACggGCCUGGCCgCCGGCGg -3'
miRNA:   3'- aGUC------GAGUGggCGGAUUGGgGGCCGC- -5'
19670 5' -61.3 NC_004686.1 + 33847 0.7 0.230092
Target:  5'- gUCAccGCUgcCGCCCGCCgauccgAACCCgccauuaCCGGCGg -3'
miRNA:   3'- -AGU--CGA--GUGGGCGGa-----UUGGG-------GGCCGC- -5'
19670 5' -61.3 NC_004686.1 + 42484 0.7 0.219328
Target:  5'- uUCAGCUaACCCacuCUUGACCCCacgGGCGg -3'
miRNA:   3'- -AGUCGAgUGGGc--GGAUUGGGGg--CCGC- -5'
19670 5' -61.3 NC_004686.1 + 43843 0.71 0.203208
Target:  5'- aUCuGCUCACCgGUCgucgUGGCCgCCGGCa -3'
miRNA:   3'- -AGuCGAGUGGgCGG----AUUGGgGGCCGc -5'
19670 5' -61.3 NC_004686.1 + 30352 0.73 0.140978
Target:  5'- aCAGCUCuCCCGCgUGAauaCCCCGGa- -3'
miRNA:   3'- aGUCGAGuGGGCGgAUUg--GGGGCCgc -5'
19670 5' -61.3 NC_004686.1 + 17251 0.75 0.107768
Target:  5'- cCAGCUCGCCaCGCUUGAUgCgCUGGCGu -3'
miRNA:   3'- aGUCGAGUGG-GCGGAUUGgG-GGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.