miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19671 3' -53.1 NC_004686.1 + 34177 0.66 0.816768
Target:  5'- gCGCCGcCGUCGGcGCCguccuugccguCACCGGAAu- -3'
miRNA:   3'- -GUGGUuGUAGCCuCGG-----------GUGGUCUUua -5'
19671 3' -53.1 NC_004686.1 + 52994 0.66 0.816768
Target:  5'- aGCCGACGUCGGAuUCgAcaacCCAGAAAUc -3'
miRNA:   3'- gUGGUUGUAGCCUcGGgU----GGUCUUUA- -5'
19671 3' -53.1 NC_004686.1 + 23568 0.66 0.816768
Target:  5'- -uCCAACAUCGGugcaucGUCCACCAc---- -3'
miRNA:   3'- guGGUUGUAGCCu-----CGGGUGGUcuuua -5'
19671 3' -53.1 NC_004686.1 + 1502 0.66 0.810989
Target:  5'- cCACaCAGCGUUGGGcGCCgugguacucgucgaaCACCAGAAu- -3'
miRNA:   3'- -GUG-GUUGUAGCCU-CGG---------------GUGGUCUUua -5'
19671 3' -53.1 NC_004686.1 + 49213 0.66 0.787182
Target:  5'- cCACCAGCcgAUCGGAGCuuguaguagCCGCCGa---- -3'
miRNA:   3'- -GUGGUUG--UAGCCUCG---------GGUGGUcuuua -5'
19671 3' -53.1 NC_004686.1 + 43914 0.66 0.787182
Target:  5'- aGCCAGCG-CGGAGCaCCAaaCGGAGu- -3'
miRNA:   3'- gUGGUUGUaGCCUCG-GGUg-GUCUUua -5'
19671 3' -53.1 NC_004686.1 + 28081 0.66 0.787182
Target:  5'- aCACCGACAcCaGAGCagcaCCGCCAGcGAUg -3'
miRNA:   3'- -GUGGUUGUaGcCUCG----GGUGGUCuUUA- -5'
19671 3' -53.1 NC_004686.1 + 47767 0.67 0.75606
Target:  5'- aCACCGACAgUGGGGCUUGCCcuucGggGUg -3'
miRNA:   3'- -GUGGUUGUaGCCUCGGGUGGu---CuuUA- -5'
19671 3' -53.1 NC_004686.1 + 3083 0.67 0.723733
Target:  5'- -uCUAGCcgCGGAuGCaCCACCAGAu-- -3'
miRNA:   3'- guGGUUGuaGCCU-CG-GGUGGUCUuua -5'
19671 3' -53.1 NC_004686.1 + 12455 0.68 0.679338
Target:  5'- aCAUCAggGCAaUGGGGCaCCGCCGGGAc- -3'
miRNA:   3'- -GUGGU--UGUaGCCUCG-GGUGGUCUUua -5'
19671 3' -53.1 NC_004686.1 + 37730 0.69 0.622856
Target:  5'- gGCCAGCGUCGcGuucuGCgUCACCGGAAGc -3'
miRNA:   3'- gUGGUUGUAGC-Cu---CG-GGUGGUCUUUa -5'
19671 3' -53.1 NC_004686.1 + 118 0.69 0.600247
Target:  5'- uGCaCGGCGUCGcGGGUCCACCGGu--- -3'
miRNA:   3'- gUG-GUUGUAGC-CUCGGGUGGUCuuua -5'
19671 3' -53.1 NC_004686.1 + 42808 0.7 0.54439
Target:  5'- cCGgCAGCGUCGGGGuUCCGCCGGuGAc -3'
miRNA:   3'- -GUgGUUGUAGCCUC-GGGUGGUCuUUa -5'
19671 3' -53.1 NC_004686.1 + 5309 0.71 0.511677
Target:  5'- cCACCAACAUCGucGAGCugaCCACCGGc--- -3'
miRNA:   3'- -GUGGUUGUAGC--CUCG---GGUGGUCuuua -5'
19671 3' -53.1 NC_004686.1 + 23399 1.05 0.002642
Target:  5'- cCACCAACAUCGGAGCCCACCAGAAAUc -3'
miRNA:   3'- -GUGGUUGUAGCCUCGGGUGGUCUUUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.