miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19671 5' -44.1 NC_004686.1 + 39090 0.66 0.999648
Target:  5'- cCCAUagUUGAAugccgaaucGGGAAACUggCCAUcUGGUUg -3'
miRNA:   3'- -GGUA--AACUU---------UCCUUUGA--GGUA-ACCGG- -5'
19671 5' -44.1 NC_004686.1 + 30669 0.66 0.999547
Target:  5'- -----cGGAuccGGAAACUCCAcagGGUCa -3'
miRNA:   3'- gguaaaCUUu--CCUUUGAGGUaa-CCGG- -5'
19671 5' -44.1 NC_004686.1 + 53263 0.67 0.999078
Target:  5'- gCCAaaacucugGAuAGGAGAacacaUCCAUgUGGCCu -3'
miRNA:   3'- -GGUaaa-----CUuUCCUUUg----AGGUA-ACCGG- -5'
19671 5' -44.1 NC_004686.1 + 39960 0.67 0.999057
Target:  5'- gCCGUUgacuucuucGAAAGuGAcacugcuagacauGACUCCGUUGGUg -3'
miRNA:   3'- -GGUAAa--------CUUUC-CU-------------UUGAGGUAACCGg -5'
19671 5' -44.1 NC_004686.1 + 19306 0.68 0.998243
Target:  5'- uCgGUUUGAucGGGAAGC-CgAUcGGCCg -3'
miRNA:   3'- -GgUAAACUu-UCCUUUGaGgUAaCCGG- -5'
19671 5' -44.1 NC_004686.1 + 35691 0.69 0.995481
Target:  5'- aCCGUUgGAcucGGGGAAAacaacggaUCCGaaUUGGCCu -3'
miRNA:   3'- -GGUAAaCU---UUCCUUUg-------AGGU--AACCGG- -5'
19671 5' -44.1 NC_004686.1 + 4860 0.69 0.993669
Target:  5'- aCCuc-UGAAAGGAAACgCCucucaUGGUCg -3'
miRNA:   3'- -GGuaaACUUUCCUUUGaGGua---ACCGG- -5'
19671 5' -44.1 NC_004686.1 + 7660 0.7 0.986547
Target:  5'- ----cUGAAAGGGGcGCgagCCAUcaUGGCCg -3'
miRNA:   3'- gguaaACUUUCCUU-UGa--GGUA--ACCGG- -5'
19671 5' -44.1 NC_004686.1 + 38830 0.7 0.984576
Target:  5'- aCCGag-GAuGGGAAugUCUgacgcccaGUUGGCCa -3'
miRNA:   3'- -GGUaaaCUuUCCUUugAGG--------UAACCGG- -5'
19671 5' -44.1 NC_004686.1 + 33464 0.71 0.979985
Target:  5'- cCCAcg-GcAAAGGAcgAACUCCGUcccUGGCUg -3'
miRNA:   3'- -GGUaaaC-UUUCCU--UUGAGGUA---ACCGG- -5'
19671 5' -44.1 NC_004686.1 + 4092 0.72 0.971293
Target:  5'- aCCAgggUGGugucuuGGggGCgCCAUUGGCg -3'
miRNA:   3'- -GGUaa-ACUuu----CCuuUGaGGUAACCGg -5'
19671 5' -44.1 NC_004686.1 + 23439 1.18 0.004768
Target:  5'- gCCAUUUGAAAGGAAACUCCAUUGGCCg -3'
miRNA:   3'- -GGUAAACUUUCCUUUGAGGUAACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.