miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19672 3' -53.1 NC_004686.1 + 45301 0.66 0.843274
Target:  5'- uGugGGCGGCGUGuaccCCGccGggGCa -3'
miRNA:   3'- -CugCUGCCGUACuucuGGCa-CuuCGc -5'
19672 3' -53.1 NC_004686.1 + 17725 0.66 0.843274
Target:  5'- cGAUGACGGCgAUGAaccggucauugAGACuguccgccugggCGUGggGUGc -3'
miRNA:   3'- -CUGCUGCCG-UACU-----------UCUG------------GCACuuCGC- -5'
19672 3' -53.1 NC_004686.1 + 12149 0.66 0.834376
Target:  5'- cGGCGcCGGCGgucAGGCCGcGggGCc -3'
miRNA:   3'- -CUGCuGCCGUacuUCUGGCaCuuCGc -5'
19672 3' -53.1 NC_004686.1 + 25001 0.66 0.825261
Target:  5'- cGACGACGGCcgcacgaaAUGGcgcGGACCaGUGuccGGCu -3'
miRNA:   3'- -CUGCUGCCG--------UACU---UCUGG-CACu--UCGc -5'
19672 3' -53.1 NC_004686.1 + 197 0.67 0.806419
Target:  5'- gGGCGACGGUgccguugucgcuGUGGucGACCaGUGAGGgGu -3'
miRNA:   3'- -CUGCUGCCG------------UACUu-CUGG-CACUUCgC- -5'
19672 3' -53.1 NC_004686.1 + 42053 0.67 0.796712
Target:  5'- cACGACGGCAcauGGACCuccauuaUGGAGCa -3'
miRNA:   3'- cUGCUGCCGUacuUCUGGc------ACUUCGc -5'
19672 3' -53.1 NC_004686.1 + 19266 0.67 0.776783
Target:  5'- cACGaguuGCGGUGUGAGGGCgGUGcGGGUGg -3'
miRNA:   3'- cUGC----UGCCGUACUUCUGgCAC-UUCGC- -5'
19672 3' -53.1 NC_004686.1 + 55302 0.67 0.776783
Target:  5'- cGACGACGcCAUGGAGuuagcguuCCGUGucugcuGCGg -3'
miRNA:   3'- -CUGCUGCcGUACUUCu-------GGCACuu----CGC- -5'
19672 3' -53.1 NC_004686.1 + 33842 0.67 0.766584
Target:  5'- uGCGACGGCGacuuGGGCCGgggUGAcGCGa -3'
miRNA:   3'- cUGCUGCCGUacu-UCUGGC---ACUuCGC- -5'
19672 3' -53.1 NC_004686.1 + 24171 0.68 0.745771
Target:  5'- gGugGAUGGgGUGu-GGCCGUGuGGCc -3'
miRNA:   3'- -CugCUGCCgUACuuCUGGCACuUCGc -5'
19672 3' -53.1 NC_004686.1 + 50112 0.69 0.691889
Target:  5'- cGGCGGCcaGGCAUGGcgcGACCcGUGAcGCGc -3'
miRNA:   3'- -CUGCUG--CCGUACUu--CUGG-CACUuCGC- -5'
19672 3' -53.1 NC_004686.1 + 22518 0.69 0.658759
Target:  5'- cACGcCGGCG-GGAGcACCGcaUGAAGCGg -3'
miRNA:   3'- cUGCuGCCGUaCUUC-UGGC--ACUUCGC- -5'
19672 3' -53.1 NC_004686.1 + 5552 0.71 0.570047
Target:  5'- -gUGGCGGCccGGAGGCUGUGAccGCGu -3'
miRNA:   3'- cuGCUGCCGuaCUUCUGGCACUu-CGC- -5'
19672 3' -53.1 NC_004686.1 + 332 0.72 0.505389
Target:  5'- uGugGAUGGCgacugcuacugcGUGGAGGagUCGUGggGCGa -3'
miRNA:   3'- -CugCUGCCG------------UACUUCU--GGCACuuCGC- -5'
19672 3' -53.1 NC_004686.1 + 24414 1.09 0.00193
Target:  5'- cGACGACGGCAUGAAGACCGUGAAGCGc -3'
miRNA:   3'- -CUGCUGCCGUACUUCUGGCACUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.