miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19672 5' -66.7 NC_004686.1 + 40506 0.69 0.12604
Target:  5'- cGGCcuGCUGCuGCGGCGucaGCCggGCCACCGc -3'
miRNA:   3'- -UCG--CGACGcCGCCGC---CGG--CGGUGGUa -5'
19672 5' -66.7 NC_004686.1 + 29588 0.69 0.113384
Target:  5'- cGgGCUGCGGUucgaucGGCGGgUGCuCGCCAg -3'
miRNA:   3'- uCgCGACGCCG------CCGCCgGCG-GUGGUa -5'
19672 5' -66.7 NC_004686.1 + 7003 0.69 0.113384
Target:  5'- uGGUGgUGUGGUGGCGuucgaggaaGCCGCCGCgAa -3'
miRNA:   3'- -UCGCgACGCCGCCGC---------CGGCGGUGgUa -5'
19672 5' -66.7 NC_004686.1 + 51519 0.69 0.113384
Target:  5'- gGGCGUggaucGCGGCGugggacGCGcucaacGCCGCCACCAa -3'
miRNA:   3'- -UCGCGa----CGCCGC------CGC------CGGCGGUGGUa -5'
19672 5' -66.7 NC_004686.1 + 5106 0.69 0.113384
Target:  5'- cAGC-CUcGCGGCGGaCGagaauGCCGCCGCUAUg -3'
miRNA:   3'- -UCGcGA-CGCCGCC-GC-----CGGCGGUGGUA- -5'
19672 5' -66.7 NC_004686.1 + 16863 0.7 0.10751
Target:  5'- cAGUGUUGCGuuGGCGGCCGgcaaCACUAUu -3'
miRNA:   3'- -UCGCGACGCcgCCGCCGGCg---GUGGUA- -5'
19672 5' -66.7 NC_004686.1 + 19790 0.7 0.104681
Target:  5'- ---uCUGCGGUGGUggaGGUCGCCACCGa -3'
miRNA:   3'- ucgcGACGCCGCCG---CCGGCGGUGGUa -5'
19672 5' -66.7 NC_004686.1 + 26246 0.7 0.094053
Target:  5'- gGGuCGgUGUGGCGGCGGCuUGCCgAUCAg -3'
miRNA:   3'- -UC-GCgACGCCGCCGCCG-GCGG-UGGUa -5'
19672 5' -66.7 NC_004686.1 + 12459 0.71 0.086761
Target:  5'- uGGCGCgGCGGCccagguuGCGuGCCGCgACCAa -3'
miRNA:   3'- -UCGCGaCGCCGc------CGC-CGGCGgUGGUa -5'
19672 5' -66.7 NC_004686.1 + 22249 0.72 0.069859
Target:  5'- gGGCGCUggcgguaaggGCGGCGGCGGCaaGCUGuCCAa -3'
miRNA:   3'- -UCGCGA----------CGCCGCCGCCGg-CGGU-GGUa -5'
19672 5' -66.7 NC_004686.1 + 31729 0.74 0.047616
Target:  5'- aGGUGUcgGUggucucgacauGGUGGCGGCCGCCGCCGc -3'
miRNA:   3'- -UCGCGa-CG-----------CCGCCGCCGGCGGUGGUa -5'
19672 5' -66.7 NC_004686.1 + 24448 1.05 0.000142
Target:  5'- aAGCGCUGCGGCGGCGGCCGCCACCAUg -3'
miRNA:   3'- -UCGCGACGCCGCCGCCGGCGGUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.