miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19674 5' -56 NC_004686.1 + 25544 0.66 0.718441
Target:  5'- cCCGCAGGGCAUCUgcuugguacaGCCAgaUCGGCc-- -3'
miRNA:   3'- -GGUGUCCUGUGGGg---------CGGU--AGCUGaag -5'
19674 5' -56 NC_004686.1 + 51946 0.66 0.718441
Target:  5'- cCCAaucCAGucCACCCaugugccucgaCGCCGUCGACaUCa -3'
miRNA:   3'- -GGU---GUCcuGUGGG-----------GCGGUAGCUGaAG- -5'
19674 5' -56 NC_004686.1 + 23856 0.66 0.70785
Target:  5'- -gACGGGACACCuUCGCCGau--CUUCa -3'
miRNA:   3'- ggUGUCCUGUGG-GGCGGUagcuGAAG- -5'
19674 5' -56 NC_004686.1 + 39733 0.66 0.697187
Target:  5'- gCC-CAGG-CGgCCCGCCugcUCGACg-- -3'
miRNA:   3'- -GGuGUCCuGUgGGGCGGu--AGCUGaag -5'
19674 5' -56 NC_004686.1 + 6223 0.66 0.686462
Target:  5'- uCCACAGuGACuCCCCGUa--CGGCgccggUCg -3'
miRNA:   3'- -GGUGUC-CUGuGGGGCGguaGCUGa----AG- -5'
19674 5' -56 NC_004686.1 + 52128 0.66 0.66487
Target:  5'- gUugAGGACAUCaCCGCacagGUCGACa-- -3'
miRNA:   3'- gGugUCCUGUGG-GGCGg---UAGCUGaag -5'
19674 5' -56 NC_004686.1 + 46845 0.66 0.661619
Target:  5'- aCgGCGGGACGCCgacuCCGCCucauugaaugccgaAUCGaucuGCUUCu -3'
miRNA:   3'- -GgUGUCCUGUGG----GGCGG--------------UAGC----UGAAG- -5'
19674 5' -56 NC_004686.1 + 51030 0.67 0.652939
Target:  5'- uCUGCAGGACGCCgaguugacgagacUCGUCAgcccacUUGACUUCc -3'
miRNA:   3'- -GGUGUCCUGUGG-------------GGCGGU------AGCUGAAG- -5'
19674 5' -56 NC_004686.1 + 39935 0.67 0.643159
Target:  5'- cCCACAcgcgcacgaaccGGACAg--CGCCGUUGACUUCu -3'
miRNA:   3'- -GGUGU------------CCUGUgggGCGGUAGCUGAAG- -5'
19674 5' -56 NC_004686.1 + 6610 0.67 0.632284
Target:  5'- uCCGCauccgAGGAUGCCCCcguGCCAUUGGugUUUCu -3'
miRNA:   3'- -GGUG-----UCCUGUGGGG---CGGUAGCU--GAAG- -5'
19674 5' -56 NC_004686.1 + 14468 0.67 0.625758
Target:  5'- aUACGGGGCACCCUcaacaacaucgaucaGCcCAUCGAUc-- -3'
miRNA:   3'- gGUGUCCUGUGGGG---------------CG-GUAGCUGaag -5'
19674 5' -56 NC_004686.1 + 24248 0.67 0.610542
Target:  5'- cCCuCGGGAUA-CCCGCCGUCG-Cg-- -3'
miRNA:   3'- -GGuGUCCUGUgGGGCGGUAGCuGaag -5'
19674 5' -56 NC_004686.1 + 51121 0.67 0.610542
Target:  5'- -gACGGGAgcgaACgUCGCCGUCGACUc- -3'
miRNA:   3'- ggUGUCCUg---UGgGGCGGUAGCUGAag -5'
19674 5' -56 NC_004686.1 + 26093 0.68 0.588873
Target:  5'- gCCugGGuGGCAgaacUCCgGCCAcggCGACUUCa -3'
miRNA:   3'- -GGugUC-CUGU----GGGgCGGUa--GCUGAAG- -5'
19674 5' -56 NC_004686.1 + 52757 0.68 0.578088
Target:  5'- gCCAC-GG-CACCgCCGCCAaCuGCUUCa -3'
miRNA:   3'- -GGUGuCCuGUGG-GGCGGUaGcUGAAG- -5'
19674 5' -56 NC_004686.1 + 34672 0.68 0.567346
Target:  5'- uCCACAGcaauccuaaGACucaCCGCCAUCGACg-- -3'
miRNA:   3'- -GGUGUC---------CUGuggGGCGGUAGCUGaag -5'
19674 5' -56 NC_004686.1 + 31906 0.69 0.535458
Target:  5'- uCCACc--GCugCCCaGCCuUCGACUUCg -3'
miRNA:   3'- -GGUGuccUGugGGG-CGGuAGCUGAAG- -5'
19674 5' -56 NC_004686.1 + 34155 0.69 0.535458
Target:  5'- gCCACccgAGGugaaugucgACGCgCCGCCGUCGGCgccgUCc -3'
miRNA:   3'- -GGUG---UCC---------UGUGgGGCGGUAGCUGa---AG- -5'
19674 5' -56 NC_004686.1 + 16645 0.69 0.535458
Target:  5'- cCCACuccGGGaguuucGCGCCCCGCCucaugCGACa-- -3'
miRNA:   3'- -GGUG---UCC------UGUGGGGCGGua---GCUGaag -5'
19674 5' -56 NC_004686.1 + 42092 0.69 0.524965
Target:  5'- gCCGCcaAGGAUgaaGCCCagcguGCCAUCGACa-- -3'
miRNA:   3'- -GGUG--UCCUG---UGGGg----CGGUAGCUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.