miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19675 3' -55.4 NC_004686.1 + 18958 0.66 0.740885
Target:  5'- gCGCGGgaGCGGgGGAAccauGCCCGCGccggGAc -3'
miRNA:   3'- -GCGUUggCGUCaCCUU----UGGGCGCa---CU- -5'
19675 3' -55.4 NC_004686.1 + 8455 0.66 0.739841
Target:  5'- uCGUuGCCGCGGUGGGAcuuccucgaugagGCCagugucCGUGAc -3'
miRNA:   3'- -GCGuUGGCGUCACCUU-------------UGGgc----GCACU- -5'
19675 3' -55.4 NC_004686.1 + 8040 0.66 0.709165
Target:  5'- cCGCuGCCGCGgaagucguucGUGG---UCCGCGUGGu -3'
miRNA:   3'- -GCGuUGGCGU----------CACCuuuGGGCGCACU- -5'
19675 3' -55.4 NC_004686.1 + 51667 0.66 0.709165
Target:  5'- uGCcGCCGCAGcGGAAuggcuugaACaCCGCGaGAa -3'
miRNA:   3'- gCGuUGGCGUCaCCUU--------UG-GGCGCaCU- -5'
19675 3' -55.4 NC_004686.1 + 46583 0.66 0.709165
Target:  5'- -cUAGCCaGCGGUGGAcagguGACCCGCu--- -3'
miRNA:   3'- gcGUUGG-CGUCACCU-----UUGGGCGcacu -5'
19675 3' -55.4 NC_004686.1 + 52188 0.67 0.659319
Target:  5'- cCGCAGCgGaAGUGGAcccugcccaacccguGcCCCGCGUGu -3'
miRNA:   3'- -GCGUUGgCgUCACCU---------------UuGGGCGCACu -5'
19675 3' -55.4 NC_004686.1 + 53123 0.67 0.654945
Target:  5'- uGCAuCCGCGGcu-AGACCCGCGUc- -3'
miRNA:   3'- gCGUuGGCGUCaccUUUGGGCGCAcu -5'
19675 3' -55.4 NC_004686.1 + 56074 0.67 0.643995
Target:  5'- cCGCGACCG--GUGGA--CCCGCGa-- -3'
miRNA:   3'- -GCGUUGGCguCACCUuuGGGCGCacu -5'
19675 3' -55.4 NC_004686.1 + 3744 0.67 0.633036
Target:  5'- gGCGGCgGCGGcGGAcugguacgacGAgCUGCGUGAa -3'
miRNA:   3'- gCGUUGgCGUCaCCU----------UUgGGCGCACU- -5'
19675 3' -55.4 NC_004686.1 + 36239 0.67 0.633036
Target:  5'- gGCAcccCCGCAGUGGAAAUgCCGUa--- -3'
miRNA:   3'- gCGUu--GGCGUCACCUUUG-GGCGcacu -5'
19675 3' -55.4 NC_004686.1 + 17460 0.68 0.577327
Target:  5'- uGCAGCCGCGcgagguGUGGGAgacggucACCCGgGUu- -3'
miRNA:   3'- gCGUUGGCGU------CACCUU-------UGGGCgCAcu -5'
19675 3' -55.4 NC_004686.1 + 37353 0.69 0.546095
Target:  5'- gGCGACUGCGGaGGAAcuCgCCGCGaUGAg -3'
miRNA:   3'- gCGUUGGCGUCaCCUUu-G-GGCGC-ACU- -5'
19675 3' -55.4 NC_004686.1 + 46416 0.7 0.483435
Target:  5'- gGCGACCGCAGUGGcgGCa-GUGUu- -3'
miRNA:   3'- gCGUUGGCGUCACCuuUGggCGCAcu -5'
19675 3' -55.4 NC_004686.1 + 38870 0.72 0.378704
Target:  5'- uGCAGCCGCAGU----GCCUGCaGUGGg -3'
miRNA:   3'- gCGUUGGCGUCAccuuUGGGCG-CACU- -5'
19675 3' -55.4 NC_004686.1 + 54847 0.72 0.352896
Target:  5'- cCGUGACCGCGGUaaGGACCCGCGc-- -3'
miRNA:   3'- -GCGUUGGCGUCAccUUUGGGCGCacu -5'
19675 3' -55.4 NC_004686.1 + 25196 1.09 0.000968
Target:  5'- cCGCAACCGCAGUGGAAACCCGCGUGAa -3'
miRNA:   3'- -GCGUUGGCGUCACCUUUGGGCGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.