miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19675 5' -57.1 NC_004686.1 + 49027 0.66 0.622702
Target:  5'- --aCCACUGAgggGCCGUgGCUGUUc- -3'
miRNA:   3'- gaaGGUGACUag-CGGCGgCGACGAcg -5'
19675 5' -57.1 NC_004686.1 + 32186 0.66 0.622702
Target:  5'- -aUCCACcGAgugaacuccaucUUGuuGCaguGCUGCUGCg -3'
miRNA:   3'- gaAGGUGaCU------------AGCggCGg--CGACGACG- -5'
19675 5' -57.1 NC_004686.1 + 31851 0.66 0.622702
Target:  5'- -cUCCACacGGcgccUUGuCCGCCGCUGCcggugGCg -3'
miRNA:   3'- gaAGGUGa-CU----AGC-GGCGGCGACGa----CG- -5'
19675 5' -57.1 NC_004686.1 + 49131 0.66 0.600907
Target:  5'- aUUCCAUccggGAUUGCaCGUgGCUGUUGa -3'
miRNA:   3'- gAAGGUGa---CUAGCG-GCGgCGACGACg -5'
19675 5' -57.1 NC_004686.1 + 21717 0.66 0.590045
Target:  5'- --gUCACUGGaggaaccccgUCgGUCGCCGUgaagGCUGCg -3'
miRNA:   3'- gaaGGUGACU----------AG-CGGCGGCGa---CGACG- -5'
19675 5' -57.1 NC_004686.1 + 39632 0.66 0.579217
Target:  5'- -aUCUGgUGAUgCGCCGCCGgUGgUGg -3'
miRNA:   3'- gaAGGUgACUA-GCGGCGGCgACgACg -5'
19675 5' -57.1 NC_004686.1 + 2965 0.67 0.568432
Target:  5'- --cCUGCUGGU-GUCGgUGCUGCUGUg -3'
miRNA:   3'- gaaGGUGACUAgCGGCgGCGACGACG- -5'
19675 5' -57.1 NC_004686.1 + 28008 0.67 0.557698
Target:  5'- --aCCGCUGAacgUGCCauauccacaGCCGCUGaaGCg -3'
miRNA:   3'- gaaGGUGACUa--GCGG---------CGGCGACgaCG- -5'
19675 5' -57.1 NC_004686.1 + 10826 0.67 0.547023
Target:  5'- gUUCCGgUGGauguggacaUCaCCGCCGCUaagcagaaGCUGCa -3'
miRNA:   3'- gAAGGUgACU---------AGcGGCGGCGA--------CGACG- -5'
19675 5' -57.1 NC_004686.1 + 28098 0.67 0.547023
Target:  5'- --gCCACguUGAgcaUCGCUGgCGgUGCUGCu -3'
miRNA:   3'- gaaGGUG--ACU---AGCGGCgGCgACGACG- -5'
19675 5' -57.1 NC_004686.1 + 47092 0.67 0.547023
Target:  5'- gUUCC-CUuacCGCCGCCGC-GUUGCc -3'
miRNA:   3'- gAAGGuGAcuaGCGGCGGCGaCGACG- -5'
19675 5' -57.1 NC_004686.1 + 43807 0.67 0.547023
Target:  5'- --gCCGCUGuggguugCGCaccCGCUGCUuGCUGCu -3'
miRNA:   3'- gaaGGUGACua-----GCG---GCGGCGA-CGACG- -5'
19675 5' -57.1 NC_004686.1 + 33710 0.67 0.536414
Target:  5'- --aCCGgUGAcggucaUCGCCGCCGggGCgggGCu -3'
miRNA:   3'- gaaGGUgACU------AGCGGCGGCgaCGa--CG- -5'
19675 5' -57.1 NC_004686.1 + 8442 0.67 0.536414
Target:  5'- --cCCACUG-UCGgUGUCGUUGCcGCg -3'
miRNA:   3'- gaaGGUGACuAGCgGCGGCGACGaCG- -5'
19675 5' -57.1 NC_004686.1 + 40482 0.67 0.525877
Target:  5'- --gCCGCUGcaguUCGCgGaacacuucggcCUGCUGCUGCg -3'
miRNA:   3'- gaaGGUGACu---AGCGgC-----------GGCGACGACG- -5'
19675 5' -57.1 NC_004686.1 + 31681 0.67 0.515419
Target:  5'- --aCCGCaGcaccGUCGCCGCCGUaUGCcGCg -3'
miRNA:   3'- gaaGGUGaC----UAGCGGCGGCG-ACGaCG- -5'
19675 5' -57.1 NC_004686.1 + 38521 0.68 0.481542
Target:  5'- -aUCCGCaacGAUCuUCGCCGCacccgaaccgucacUGCUGCg -3'
miRNA:   3'- gaAGGUGa--CUAGcGGCGGCG--------------ACGACG- -5'
19675 5' -57.1 NC_004686.1 + 39272 0.68 0.474494
Target:  5'- --gCCACgcaGAUCGCCGaacaGCUggGCUGCc -3'
miRNA:   3'- gaaGGUGa--CUAGCGGCgg--CGA--CGACG- -5'
19675 5' -57.1 NC_004686.1 + 36314 0.69 0.407098
Target:  5'- --cCCgaGCUGGUCGCCGagguugaGCgGCUGCg -3'
miRNA:   3'- gaaGG--UGACUAGCGGCgg-----CGaCGACG- -5'
19675 5' -57.1 NC_004686.1 + 25158 0.71 0.346028
Target:  5'- -gUgCugUGGUCGCgGCCaagGCUGCUGg -3'
miRNA:   3'- gaAgGugACUAGCGgCGG---CGACGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.