Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19675 | 5' | -57.1 | NC_004686.1 | + | 25230 | 1.12 | 0.000386 |
Target: 5'- gCUUCCACUGAUCGCCGCCGCUGCUGCg -3' miRNA: 3'- -GAAGGUGACUAGCGGCGGCGACGACG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 24692 | 0.73 | 0.232163 |
Target: 5'- aCUgCCGCUGAUCcCCGUCGUcacgauccUGCUGCc -3' miRNA: 3'- -GAaGGUGACUAGcGGCGGCG--------ACGACG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 41351 | 0.73 | 0.238248 |
Target: 5'- --gCCGCUGcUCuucUCGCUGCUGCUGCg -3' miRNA: 3'- gaaGGUGACuAGc--GGCGGCGACGACG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 48927 | 0.73 | 0.263928 |
Target: 5'- --gCCGCccuucUCGCCGCUGCUGUUGUa -3' miRNA: 3'- gaaGGUGacu--AGCGGCGGCGACGACG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 33117 | 0.72 | 0.298391 |
Target: 5'- --aUCGCUGAUgcugcgauccacaUGCUGCCGCUGgaGCu -3' miRNA: 3'- gaaGGUGACUA-------------GCGGCGGCGACgaCG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 33993 | 0.71 | 0.306592 |
Target: 5'- --gCCAUUGGUugggcugcUGCCGCCGUUGCcGCc -3' miRNA: 3'- gaaGGUGACUA--------GCGGCGGCGACGaCG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 44984 | 0.71 | 0.314196 |
Target: 5'- -aUCCACgGAaCGCCGCC-CUGCUugaucGCa -3' miRNA: 3'- gaAGGUGaCUaGCGGCGGcGACGA-----CG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 33902 | 0.71 | 0.346028 |
Target: 5'- gUUCCGUUG-UUGCCGCCGCUGaugGUg -3' miRNA: 3'- gAAGGUGACuAGCGGCGGCGACga-CG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 25158 | 0.71 | 0.346028 |
Target: 5'- -gUgCugUGGUCGCgGCCaagGCUGCUGg -3' miRNA: 3'- gaAgGugACUAGCGgCGG---CGACGACg -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 36314 | 0.69 | 0.407098 |
Target: 5'- --cCCgaGCUGGUCGCCGagguugaGCgGCUGCg -3' miRNA: 3'- gaaGG--UGACUAGCGGCgg-----CGaCGACG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 39272 | 0.68 | 0.474494 |
Target: 5'- --gCCACgcaGAUCGCCGaacaGCUggGCUGCc -3' miRNA: 3'- gaaGGUGa--CUAGCGGCgg--CGA--CGACG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 38521 | 0.68 | 0.481542 |
Target: 5'- -aUCCGCaacGAUCuUCGCCGCacccgaaccgucacUGCUGCg -3' miRNA: 3'- gaAGGUGa--CUAGcGGCGGCG--------------ACGACG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 31681 | 0.67 | 0.515419 |
Target: 5'- --aCCGCaGcaccGUCGCCGCCGUaUGCcGCg -3' miRNA: 3'- gaaGGUGaC----UAGCGGCGGCG-ACGaCG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 40482 | 0.67 | 0.525877 |
Target: 5'- --gCCGCUGcaguUCGCgGaacacuucggcCUGCUGCUGCg -3' miRNA: 3'- gaaGGUGACu---AGCGgC-----------GGCGACGACG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 33710 | 0.67 | 0.536414 |
Target: 5'- --aCCGgUGAcggucaUCGCCGCCGggGCgggGCu -3' miRNA: 3'- gaaGGUgACU------AGCGGCGGCgaCGa--CG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 8442 | 0.67 | 0.536414 |
Target: 5'- --cCCACUG-UCGgUGUCGUUGCcGCg -3' miRNA: 3'- gaaGGUGACuAGCgGCGGCGACGaCG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 47092 | 0.67 | 0.547023 |
Target: 5'- gUUCC-CUuacCGCCGCCGC-GUUGCc -3' miRNA: 3'- gAAGGuGAcuaGCGGCGGCGaCGACG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 10826 | 0.67 | 0.547023 |
Target: 5'- gUUCCGgUGGauguggacaUCaCCGCCGCUaagcagaaGCUGCa -3' miRNA: 3'- gAAGGUgACU---------AGcGGCGGCGA--------CGACG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 28098 | 0.67 | 0.547023 |
Target: 5'- --gCCACguUGAgcaUCGCUGgCGgUGCUGCu -3' miRNA: 3'- gaaGGUG--ACU---AGCGGCgGCgACGACG- -5' |
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19675 | 5' | -57.1 | NC_004686.1 | + | 43807 | 0.67 | 0.547023 |
Target: 5'- --gCCGCUGuggguugCGCaccCGCUGCUuGCUGCu -3' miRNA: 3'- gaaGGUGACua-----GCG---GCGGCGA-CGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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