miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19676 3' -55.5 NC_004686.1 + 3493 0.67 0.60907
Target:  5'- uGAUCggUuuGACaCCCCaGCAGGcGCGUCg- -3'
miRNA:   3'- -CUAGuuG--UUG-GGGG-CGUCC-CGUAGac -5'
19676 3' -55.5 NC_004686.1 + 46241 0.67 0.598
Target:  5'- aGAUCGGCAACCCaCGauCGGcGaGCAUCUGc -3'
miRNA:   3'- -CUAGUUGUUGGGgGC--GUC-C-CGUAGAC- -5'
19676 3' -55.5 NC_004686.1 + 11039 0.67 0.598
Target:  5'- cGAUCggUGGCCCCgGCccgaAGGGCAa--- -3'
miRNA:   3'- -CUAGuuGUUGGGGgCG----UCCCGUagac -5'
19676 3' -55.5 NC_004686.1 + 35227 0.67 0.59358
Target:  5'- uGAUCGGCGccgauauACCCCCGUaccccagguucgccGGGGCAggCUu -3'
miRNA:   3'- -CUAGUUGU-------UGGGGGCG--------------UCCCGUa-GAc -5'
19676 3' -55.5 NC_004686.1 + 45606 0.68 0.575957
Target:  5'- cAUCGGCGACCUgCGCGGcGGCuuucGUCUu -3'
miRNA:   3'- cUAGUUGUUGGGgGCGUC-CCG----UAGAc -5'
19676 3' -55.5 NC_004686.1 + 12434 0.68 0.532497
Target:  5'- --aCAGCAGCCUCCGCcgaugccacaucAGGGCAa--- -3'
miRNA:   3'- cuaGUUGUUGGGGGCG------------UCCCGUagac -5'
19676 3' -55.5 NC_004686.1 + 18110 0.7 0.448678
Target:  5'- cGAUCAuCAACaCUuuGCGGGGCAcggucggggcgauUCUGa -3'
miRNA:   3'- -CUAGUuGUUG-GGggCGUCCCGU-------------AGAC- -5'
19676 3' -55.5 NC_004686.1 + 7685 0.72 0.315982
Target:  5'- --gCAACAucAUCCaaauaCGCGGGGCAUCUGc -3'
miRNA:   3'- cuaGUUGU--UGGGg----GCGUCCCGUAGAC- -5'
19676 3' -55.5 NC_004686.1 + 36232 0.74 0.27157
Target:  5'- cGUCAGCGgcACCCCCGCAGuGGaaaugccguaCGUCUGc -3'
miRNA:   3'- cUAGUUGU--UGGGGGCGUC-CC----------GUAGAC- -5'
19676 3' -55.5 NC_004686.1 + 25532 1.07 0.001087
Target:  5'- aGAUCAACAACCCCCGCAGGGCAUCUGc -3'
miRNA:   3'- -CUAGUUGUUGGGGGCGUCCCGUAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.