miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19676 5' -60.1 NC_004686.1 + 18747 0.67 0.430157
Target:  5'- cGUCGGGUCGGgCACGcacuacaUCCG-CGGCu -3'
miRNA:   3'- -CGGUCUAGCCgGUGCuc-----AGGCgGCCG- -5'
19676 5' -60.1 NC_004686.1 + 20962 0.67 0.430157
Target:  5'- aGCCAGcUCGG-CGCGAGUCUcaGCCu-- -3'
miRNA:   3'- -CGGUCuAGCCgGUGCUCAGG--CGGccg -5'
19676 5' -60.1 NC_004686.1 + 17505 0.67 0.428322
Target:  5'- aGCCcuugaacuuguuGAUCgGGCCGCG-GUCguUGCUGGCg -3'
miRNA:   3'- -CGGu-----------CUAG-CCGGUGCuCAG--GCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 8977 0.67 0.420124
Target:  5'- gGUCAGGUUuccgaGGCCAgcccaucCGAGgaccuucgcUUCGCCGGCg -3'
miRNA:   3'- -CGGUCUAG-----CCGGU-------GCUC---------AGGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 19898 0.68 0.403134
Target:  5'- aCCAGcUCGGgCACGAGagugCgCGCCugGGCg -3'
miRNA:   3'- cGGUCuAGCCgGUGCUCa---G-GCGG--CCG- -5'
19676 5' -60.1 NC_004686.1 + 28031 0.68 0.403134
Target:  5'- aGCCGcuGAagCGGUguUGGcGUCCGUCGGCa -3'
miRNA:   3'- -CGGU--CUa-GCCGguGCU-CAGGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 5918 0.68 0.394368
Target:  5'- gGCCGG--UGGCUAUcGG-CUGCCGGCg -3'
miRNA:   3'- -CGGUCuaGCCGGUGcUCaGGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 42802 0.68 0.385727
Target:  5'- aGCCAGGcaggCGGacgccUCAUGAGU-CGCCGGUu -3'
miRNA:   3'- -CGGUCUa---GCC-----GGUGCUCAgGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 26477 0.68 0.385727
Target:  5'- uGCCAcccgcgucAUCGGCCACaagGAGUggGCCGGUg -3'
miRNA:   3'- -CGGUc-------UAGCCGGUG---CUCAggCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 18219 0.68 0.377211
Target:  5'- uCCAGGUCaGCCAUGGGggcgUUGCgGGUg -3'
miRNA:   3'- cGGUCUAGcCGGUGCUCa---GGCGgCCG- -5'
19676 5' -60.1 NC_004686.1 + 11121 0.68 0.360564
Target:  5'- uGUCGGGggacgugCGGCCaguguuugGCGAGgaUCUGUCGGCa -3'
miRNA:   3'- -CGGUCUa------GCCGG--------UGCUC--AGGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 44167 0.68 0.360564
Target:  5'- uGCCGGAcCGGgCAUGGGUgaucucacaaCCGCauuCGGCa -3'
miRNA:   3'- -CGGUCUaGCCgGUGCUCA----------GGCG---GCCG- -5'
19676 5' -60.1 NC_004686.1 + 8549 0.68 0.360564
Target:  5'- aCgAGAUUcGCCGCcAGuUCCGCCGGUa -3'
miRNA:   3'- cGgUCUAGcCGGUGcUC-AGGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 70 0.69 0.32123
Target:  5'- uCCGGGaucgUCGGCgGgcUGAgGUUCGCCGGCg -3'
miRNA:   3'- cGGUCU----AGCCGgU--GCU-CAGGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 48661 0.7 0.278382
Target:  5'- uCUGGGUCGGggaaguCCACGGGUCCuuGCUGGUu -3'
miRNA:   3'- cGGUCUAGCC------GGUGCUCAGG--CGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 109 0.7 0.2717
Target:  5'- gGUCAGAggugcaCGGCguCGCGGGUCCaCCGGUc -3'
miRNA:   3'- -CGGUCUa-----GCCG--GUGCUCAGGcGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 2662 0.71 0.258723
Target:  5'- gGCCGGuUUGGUUGCGGGUUCGUuugUGGCg -3'
miRNA:   3'- -CGGUCuAGCCGGUGCUCAGGCG---GCCG- -5'
19676 5' -60.1 NC_004686.1 + 50861 0.71 0.252427
Target:  5'- aGCCAGGUCGGgCGuggcUGAGg-UGCCGGUg -3'
miRNA:   3'- -CGGUCUAGCCgGU----GCUCagGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 12152 0.71 0.252427
Target:  5'- cGCCGGcgGUCaGGCCGCGGGgCCaGCggCGGCg -3'
miRNA:   3'- -CGGUC--UAG-CCGGUGCUCaGG-CG--GCCG- -5'
19676 5' -60.1 NC_004686.1 + 45437 0.71 0.240214
Target:  5'- uCCAGggCGGCUugcgccGCGGGggUGCCGGCa -3'
miRNA:   3'- cGGUCuaGCCGG------UGCUCagGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.