miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19677 3' -61.7 NC_004686.1 + 21968 0.66 0.412022
Target:  5'- aCGACgcgCGGacuCGGCGGCGCUGGcGguGCCAa -3'
miRNA:   3'- gGCUG---GCC---GUCGUCGCGACC-C--UGGUg -5'
19677 3' -61.7 NC_004686.1 + 46417 0.66 0.394368
Target:  5'- gCGACCgcaguGGCGGCAGUGUUGGcAgCAg -3'
miRNA:   3'- gGCUGG-----CCGUCGUCGCGACCcUgGUg -5'
19677 3' -61.7 NC_004686.1 + 22875 0.66 0.393498
Target:  5'- cUCGACCGG-AGCAGacauauucguaucCGUaucuUGGGACCGa -3'
miRNA:   3'- -GGCUGGCCgUCGUC-------------GCG----ACCCUGGUg -5'
19677 3' -61.7 NC_004686.1 + 10517 0.66 0.385727
Target:  5'- uCCGACaaccuugcugaGGCAGCGcagaaCGCUGGGAguuuCUACg -3'
miRNA:   3'- -GGCUGg----------CCGUCGUc----GCGACCCU----GGUG- -5'
19677 3' -61.7 NC_004686.1 + 7967 0.66 0.385727
Target:  5'- cCCGACCgGGCAGCGGCuCcccGGACgAa -3'
miRNA:   3'- -GGCUGG-CCGUCGUCGcGac-CCUGgUg -5'
19677 3' -61.7 NC_004686.1 + 1298 0.66 0.377211
Target:  5'- gCCG-CCGcGCccgcaggaAGUGGCGUUGGGugUGCa -3'
miRNA:   3'- -GGCuGGC-CG--------UCGUCGCGACCCugGUG- -5'
19677 3' -61.7 NC_004686.1 + 22564 0.66 0.377211
Target:  5'- gCCGcccucaccaucACCGGCGGcCAGCcCUugucGGGACCGg -3'
miRNA:   3'- -GGC-----------UGGCCGUC-GUCGcGA----CCCUGGUg -5'
19677 3' -61.7 NC_004686.1 + 16876 0.66 0.376366
Target:  5'- gCGGCCGGCAaCacuauugAGgGCUGGuauGACCGCc -3'
miRNA:   3'- gGCUGGCCGUcG-------UCgCGACC---CUGGUG- -5'
19677 3' -61.7 NC_004686.1 + 12171 0.67 0.359745
Target:  5'- -gGGCCaGCGGCGGCGUucgcaaucggguUGGGugcuaacGCCGCu -3'
miRNA:   3'- ggCUGGcCGUCGUCGCG------------ACCC-------UGGUG- -5'
19677 3' -61.7 NC_004686.1 + 43544 0.67 0.355671
Target:  5'- -gGACaCGGCAGCGGCauuGgUGGGgaguccucagugauaGCCACc -3'
miRNA:   3'- ggCUG-GCCGUCGUCG---CgACCC---------------UGGUG- -5'
19677 3' -61.7 NC_004686.1 + 3491 0.67 0.352435
Target:  5'- aCUGAUCGGUuugacaccccAGCAgGCGCgucGGGCCAUg -3'
miRNA:   3'- -GGCUGGCCG----------UCGU-CGCGac-CCUGGUG- -5'
19677 3' -61.7 NC_004686.1 + 25738 0.67 0.344436
Target:  5'- aCGGCCGGUGcGCAGUauGCguuGGAUCGCa -3'
miRNA:   3'- gGCUGGCCGU-CGUCG--CGac-CCUGGUG- -5'
19677 3' -61.7 NC_004686.1 + 48819 0.67 0.344436
Target:  5'- uUCGACCaGCAGcCGGUGUacGGACUGCa -3'
miRNA:   3'- -GGCUGGcCGUC-GUCGCGacCCUGGUG- -5'
19677 3' -61.7 NC_004686.1 + 22354 0.67 0.328833
Target:  5'- aUCGGCgGGCGGCAGCGgUGacGGcuCCAa -3'
miRNA:   3'- -GGCUGgCCGUCGUCGCgAC--CCu-GGUg -5'
19677 3' -61.7 NC_004686.1 + 18825 0.67 0.328833
Target:  5'- gUCGA-CGGCGGCGGUGCgcgacGaGACCGCc -3'
miRNA:   3'- -GGCUgGCCGUCGUCGCGa----CcCUGGUG- -5'
19677 3' -61.7 NC_004686.1 + 16999 0.67 0.32123
Target:  5'- gCCG-CCGGCGGguCGGCGUaaucaUGGGugCGg -3'
miRNA:   3'- -GGCuGGCCGUC--GUCGCG-----ACCCugGUg -5'
19677 3' -61.7 NC_004686.1 + 13672 0.68 0.30642
Target:  5'- gUGACUGuGCAguugauucagccGCGGCGCUGGucCCGCc -3'
miRNA:   3'- gGCUGGC-CGU------------CGUCGCGACCcuGGUG- -5'
19677 3' -61.7 NC_004686.1 + 39178 0.68 0.30642
Target:  5'- gCCGACgGGC-GCAGaGgUGGGGCgCAUg -3'
miRNA:   3'- -GGCUGgCCGuCGUCgCgACCCUG-GUG- -5'
19677 3' -61.7 NC_004686.1 + 29491 0.68 0.299213
Target:  5'- gCGACagcaucaacgaGGguGCGGCcacccaaCUGGGGCCACu -3'
miRNA:   3'- gGCUGg----------CCguCGUCGc------GACCCUGGUG- -5'
19677 3' -61.7 NC_004686.1 + 12087 0.68 0.292138
Target:  5'- aUCGACCaGGCGGCuucUGCUGcGGcuACCGCg -3'
miRNA:   3'- -GGCUGG-CCGUCGuc-GCGAC-CC--UGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.