miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19677 5' -55.7 NC_004686.1 + 786 0.66 0.692547
Target:  5'- uCGGU--UGCCGcuUUGUCCgCGGCGGUc -3'
miRNA:   3'- -GCCAcuGCGGU--AACAGGgGCCGUUAu -5'
19677 5' -55.7 NC_004686.1 + 42316 0.66 0.692547
Target:  5'- gCGGgugcUGAUGCgGU--UCCCCGGCAu-- -3'
miRNA:   3'- -GCC----ACUGCGgUAacAGGGGCCGUuau -5'
19677 5' -55.7 NC_004686.1 + 23045 0.66 0.681645
Target:  5'- uGuGUGGCGUUggUGgcuagCCCCGGCGGc- -3'
miRNA:   3'- gC-CACUGCGGuaACa----GGGGCCGUUau -5'
19677 5' -55.7 NC_004686.1 + 33579 0.66 0.681645
Target:  5'- cCGGUGAUGgCGaucUgCCCGGCGGUGg -3'
miRNA:   3'- -GCCACUGCgGUaacAgGGGCCGUUAU- -5'
19677 5' -55.7 NC_004686.1 + 7217 0.66 0.670695
Target:  5'- gGGUGACuucuggcuGCCGgacgCCCCGGguGUGc -3'
miRNA:   3'- gCCACUG--------CGGUaacaGGGGCCguUAU- -5'
19677 5' -55.7 NC_004686.1 + 1223 0.66 0.65971
Target:  5'- gCGGUGGCGCgGUUGUaggCGGCGc-- -3'
miRNA:   3'- -GCCACUGCGgUAACAgggGCCGUuau -5'
19677 5' -55.7 NC_004686.1 + 2705 0.66 0.648698
Target:  5'- gCGGUGACGgggguggaGUUGUucaCCCUGGCAGg- -3'
miRNA:   3'- -GCCACUGCgg------UAACA---GGGGCCGUUau -5'
19677 5' -55.7 NC_004686.1 + 42495 0.67 0.637671
Target:  5'- uCGGUGcccguucgguccACGCuggCAUUaUCCCCGGCGAa- -3'
miRNA:   3'- -GCCAC------------UGCG---GUAAcAGGGGCCGUUau -5'
19677 5' -55.7 NC_004686.1 + 17673 0.67 0.626639
Target:  5'- gCGGUGACgauggcgucucgGUCGUUGUCgacUCCGGUGAUGc -3'
miRNA:   3'- -GCCACUG------------CGGUAACAG---GGGCCGUUAU- -5'
19677 5' -55.7 NC_004686.1 + 43724 0.69 0.518063
Target:  5'- gGGUaGGCGCCcccgGUCCC-GGCGGUGc -3'
miRNA:   3'- gCCA-CUGCGGuaa-CAGGGgCCGUUAU- -5'
19677 5' -55.7 NC_004686.1 + 11943 0.7 0.417726
Target:  5'- uGGUGAUGaCAcUG-CCCCGGCGAg- -3'
miRNA:   3'- gCCACUGCgGUaACaGGGGCCGUUau -5'
19677 5' -55.7 NC_004686.1 + 52620 0.71 0.408348
Target:  5'- -cGUGGCGCCAUUGUUCgaCCGGuCGAUc -3'
miRNA:   3'- gcCACUGCGGUAACAGG--GGCC-GUUAu -5'
19677 5' -55.7 NC_004686.1 + 5387 0.71 0.399103
Target:  5'- uCGGUGACaaCC--UGUCCCCGGaCGGUGu -3'
miRNA:   3'- -GCCACUGc-GGuaACAGGGGCC-GUUAU- -5'
19677 5' -55.7 NC_004686.1 + 33048 0.72 0.354938
Target:  5'- uGG-GAUGCCGUUGcCCCCGaGCcGUAg -3'
miRNA:   3'- gCCaCUGCGGUAACaGGGGC-CGuUAU- -5'
19677 5' -55.7 NC_004686.1 + 25969 1.07 0.001303
Target:  5'- uCGGUGACGCCAUUGUCCCCGGCAAUAu -3'
miRNA:   3'- -GCCACUGCGGUAACAGGGGCCGUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.