miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19678 3' -54 NC_004686.1 + 21370 0.66 0.814006
Target:  5'- cGGCGGCUUauGGGuCGUCggaguuggggGCGGUGUc -3'
miRNA:   3'- -CCGCUGAAguUCCuGUAGg---------CGCCACA- -5'
19678 3' -54 NC_004686.1 + 551 0.66 0.804523
Target:  5'- cGGUGuGCUguugggCGAGGGCGUUCcacaccuuGCGGUGg -3'
miRNA:   3'- -CCGC-UGAa-----GUUCCUGUAGG--------CGCCACa -5'
19678 3' -54 NC_004686.1 + 46336 0.66 0.775027
Target:  5'- aGCGACgUUUGAGcGAUcgCCGCGGcGUc -3'
miRNA:   3'- cCGCUG-AAGUUC-CUGuaGGCGCCaCA- -5'
19678 3' -54 NC_004686.1 + 7217 0.66 0.775027
Target:  5'- gGGUGACUUCuggcugccGGACGccCCG-GGUGUg -3'
miRNA:   3'- -CCGCUGAAGuu------CCUGUa-GGCgCCACA- -5'
19678 3' -54 NC_004686.1 + 50187 0.67 0.744194
Target:  5'- cGGCGAUgUCAucGGGCAggUCUGCGGc-- -3'
miRNA:   3'- -CCGCUGaAGUu-CCUGU--AGGCGCCaca -5'
19678 3' -54 NC_004686.1 + 44127 0.67 0.719844
Target:  5'- cGGCGAacgUUCGgcaaguuuugaucuGGGACAaaCGCGGUGc -3'
miRNA:   3'- -CCGCUg--AAGU--------------UCCUGUagGCGCCACa -5'
19678 3' -54 NC_004686.1 + 7118 0.7 0.56326
Target:  5'- cGGCGGCcaCAAGGACGcUggcguaccagcgucgCUGCGGUGUc -3'
miRNA:   3'- -CCGCUGaaGUUCCUGU-A---------------GGCGCCACA- -5'
19678 3' -54 NC_004686.1 + 22012 0.71 0.484924
Target:  5'- cGGUGACggCAAGGACGgcgCCGaCGGcGg -3'
miRNA:   3'- -CCGCUGaaGUUCCUGUa--GGC-GCCaCa -5'
19678 3' -54 NC_004686.1 + 49056 0.72 0.474722
Target:  5'- cGGCGGCagCGAGGACG-CCcUGGUGg -3'
miRNA:   3'- -CCGCUGaaGUUCCUGUaGGcGCCACa -5'
19678 3' -54 NC_004686.1 + 4548 0.76 0.255509
Target:  5'- cGGCGGCaccgaccucUUCAGGGACGUCgGCgaGGUGg -3'
miRNA:   3'- -CCGCUG---------AAGUUCCUGUAGgCG--CCACa -5'
19678 3' -54 NC_004686.1 + 26117 1.09 0.00137
Target:  5'- cGGCGACUUCAAGGACAUCCGCGGUGUc -3'
miRNA:   3'- -CCGCUGAAGUUCCUGUAGGCGCCACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.