miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19679 3' -54.9 NC_004686.1 + 5333 0.66 0.774955
Target:  5'- cCGGCACCucaGcCACGccCGaccUGGCUGUUGa -3'
miRNA:   3'- -GCCGUGG---CaGUGUuaGC---ACCGACAGC- -5'
19679 3' -54.9 NC_004686.1 + 31971 0.66 0.754703
Target:  5'- gGGCgAUUGUUGCGAUUgcgaagacgGUGGCUGUUGc -3'
miRNA:   3'- gCCG-UGGCAGUGUUAG---------CACCGACAGC- -5'
19679 3' -54.9 NC_004686.1 + 12062 0.66 0.754703
Target:  5'- gGGCGCCGagGCGAUCaacGGuCUGaUCGa -3'
miRNA:   3'- gCCGUGGCagUGUUAGca-CC-GAC-AGC- -5'
19679 3' -54.9 NC_004686.1 + 20982 0.66 0.744386
Target:  5'- uCGGCGCCGaUCACugguAUUGggGGCgGUaCGg -3'
miRNA:   3'- -GCCGUGGC-AGUGu---UAGCa-CCGaCA-GC- -5'
19679 3' -54.9 NC_004686.1 + 21188 0.67 0.723427
Target:  5'- uGGCACUGguucagCGCAGacguUUGUGG-UGUCGg -3'
miRNA:   3'- gCCGUGGCa-----GUGUU----AGCACCgACAGC- -5'
19679 3' -54.9 NC_004686.1 + 16718 0.67 0.702108
Target:  5'- aCGGCACC-UCGCAGUUcUGGUuuUGUgGa -3'
miRNA:   3'- -GCCGUGGcAGUGUUAGcACCG--ACAgC- -5'
19679 3' -54.9 NC_004686.1 + 49023 0.67 0.702108
Target:  5'- aGGCACCa-CugAGgggcCGUGGCUGUUc -3'
miRNA:   3'- gCCGUGGcaGugUUa---GCACCGACAGc -5'
19679 3' -54.9 NC_004686.1 + 16257 0.68 0.64782
Target:  5'- aCGGCGCUGUC-CGGUuCGUGcGCgUGUgGg -3'
miRNA:   3'- -GCCGUGGCAGuGUUA-GCAC-CG-ACAgC- -5'
19679 3' -54.9 NC_004686.1 + 12177 0.68 0.64782
Target:  5'- gCGGCGgCGuUCGCAAUCG-GGUUGg-- -3'
miRNA:   3'- -GCCGUgGC-AGUGUUAGCaCCGACagc -5'
19679 3' -54.9 NC_004686.1 + 51857 0.68 0.636879
Target:  5'- aCGGCACCaGUCGCA-UCGaaUGGC--UCGa -3'
miRNA:   3'- -GCCGUGG-CAGUGUuAGC--ACCGacAGC- -5'
19679 3' -54.9 NC_004686.1 + 12154 0.68 0.614992
Target:  5'- aGcGCAUUGUCACGGUgCGUGGUguuuucGUCGu -3'
miRNA:   3'- gC-CGUGGCAGUGUUA-GCACCGa-----CAGC- -5'
19679 3' -54.9 NC_004686.1 + 2640 0.72 0.42614
Target:  5'- uCGGCGCCGUCGCGGUUugaacaacuuGUUGUCGa -3'
miRNA:   3'- -GCCGUGGCAGUGUUAGcac-------CGACAGC- -5'
19679 3' -54.9 NC_004686.1 + 26245 1.1 0.000987
Target:  5'- aCGGCACCGUCACAAUCGUGGCUGUCGg -3'
miRNA:   3'- -GCCGUGGCAGUGUUAGCACCGACAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.