miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19680 5' -57.2 NC_004686.1 + 44455 0.66 0.598974
Target:  5'- cGUUgaugCCguugGGCaGGGUGCCCGCCa--- -3'
miRNA:   3'- aCAAa---GGa---CCG-CUCGUGGGCGGcuag -5'
19680 5' -57.2 NC_004686.1 + 46259 0.66 0.58811
Target:  5'- -------cGGCGAGCAUCUGCaGAUCg -3'
miRNA:   3'- acaaaggaCCGCUCGUGGGCGgCUAG- -5'
19680 5' -57.2 NC_004686.1 + 11732 0.66 0.58811
Target:  5'- ---gUCacaUGGCGGGCACCCuGCCc--- -3'
miRNA:   3'- acaaAGg--ACCGCUCGUGGG-CGGcuag -5'
19680 5' -57.2 NC_004686.1 + 6400 0.66 0.577281
Target:  5'- gGUgcggUUCUGGCGGGUca--GCCGAUCu -3'
miRNA:   3'- aCAa---AGGACCGCUCGugggCGGCUAG- -5'
19680 5' -57.2 NC_004686.1 + 8252 0.66 0.574041
Target:  5'- --cUUCCgucgcgccGGCGAGCcaaccgaaccuuccACuuGCCGGUCa -3'
miRNA:   3'- acaAAGGa-------CCGCUCG--------------UGggCGGCUAG- -5'
19680 5' -57.2 NC_004686.1 + 18366 0.67 0.555766
Target:  5'- gUGgcUgCUGGCGGGgaucucCACCaauaaGCCGGUCg -3'
miRNA:   3'- -ACaaAgGACCGCUC------GUGGg----CGGCUAG- -5'
19680 5' -57.2 NC_004686.1 + 35164 0.68 0.503146
Target:  5'- ----aCC-GGUGGGUACgCCGCCGAUa -3'
miRNA:   3'- acaaaGGaCCGCUCGUG-GGCGGCUAg -5'
19680 5' -57.2 NC_004686.1 + 6336 0.68 0.452809
Target:  5'- cGUggCCU-GCGGGaauuacCACUCGCCGAUCu -3'
miRNA:   3'- aCAaaGGAcCGCUC------GUGGGCGGCUAG- -5'
19680 5' -57.2 NC_004686.1 + 19434 0.7 0.387253
Target:  5'- -aUUUCCggGGCGGGUcgucaccacgACCgUGCCGAUCg -3'
miRNA:   3'- acAAAGGa-CCGCUCG----------UGG-GCGGCUAG- -5'
19680 5' -57.2 NC_004686.1 + 11091 0.7 0.351869
Target:  5'- ----cCCcGGCGAGCACaugcucaCCGCCGAUg -3'
miRNA:   3'- acaaaGGaCCGCUCGUG-------GGCGGCUAg -5'
19680 5' -57.2 NC_004686.1 + 56053 0.73 0.243174
Target:  5'- cGUcgCCUGGCGguucGGCACCCGCgacCGGUg -3'
miRNA:   3'- aCAaaGGACCGC----UCGUGGGCG---GCUAg -5'
19680 5' -57.2 NC_004686.1 + 42465 0.73 0.230918
Target:  5'- gGUUgaaCCggGGUGAGCAUCCGCaGAUCa -3'
miRNA:   3'- aCAAa--GGa-CCGCUCGUGGGCGgCUAG- -5'
19680 5' -57.2 NC_004686.1 + 26595 1.1 0.000514
Target:  5'- gUGUUUCCUGGCGAGCACCCGCCGAUCg -3'
miRNA:   3'- -ACAAAGGACCGCUCGUGGGCGGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.