miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19681 5' -54.6 NC_004686.1 + 37064 0.66 0.767266
Target:  5'- aUCGGCGUCGaaAUGUUCacccucgaugaaaguCUUGCCGUu -3'
miRNA:   3'- aAGCUGCGGUagUACAAG---------------GAGCGGCG- -5'
19681 5' -54.6 NC_004686.1 + 2639 0.66 0.763161
Target:  5'- aUCGGCGCCGUCGcgGUUUgaacaaCUUGuuGUc -3'
miRNA:   3'- aAGCUGCGGUAGUa-CAAG------GAGCggCG- -5'
19681 5' -54.6 NC_004686.1 + 52599 0.66 0.752806
Target:  5'- -cCGACGCCcUCcacaacGUucgCCUCGcCCGCg -3'
miRNA:   3'- aaGCUGCGGuAGua----CAa--GGAGC-GGCG- -5'
19681 5' -54.6 NC_004686.1 + 42054 0.66 0.742325
Target:  5'- -aCGACGgcacauggaccuCCAUUAUGgagcaagUCCgCGCCGCc -3'
miRNA:   3'- aaGCUGC------------GGUAGUACa------AGGaGCGGCG- -5'
19681 5' -54.6 NC_004686.1 + 38297 0.66 0.725326
Target:  5'- aUCcACGUCGUCAUggcuuucaucgcagcGUUCCUCGguguCCGCu -3'
miRNA:   3'- aAGcUGCGGUAGUA---------------CAAGGAGC----GGCG- -5'
19681 5' -54.6 NC_004686.1 + 41651 0.67 0.703743
Target:  5'- gUCGACGauGUCAaugacgagUGUUCCguagcggagguuggCGCCGCg -3'
miRNA:   3'- aAGCUGCggUAGU--------ACAAGGa-------------GCGGCG- -5'
19681 5' -54.6 NC_004686.1 + 32891 0.67 0.697208
Target:  5'- -cCGACGUCGUCAcggUGUUCUgggugaguugggUGCCGUu -3'
miRNA:   3'- aaGCUGCGGUAGU---ACAAGGa-----------GCGGCG- -5'
19681 5' -54.6 NC_004686.1 + 2889 0.67 0.666448
Target:  5'- --gGACGCCGgggugCGUGaacuggCC-CGCCGCg -3'
miRNA:   3'- aagCUGCGGUa----GUACaa----GGaGCGGCG- -5'
19681 5' -54.6 NC_004686.1 + 38060 0.67 0.655388
Target:  5'- gUCGugGuUCcgCccGUUCCUgcCGCCGCa -3'
miRNA:   3'- aAGCugC-GGuaGuaCAAGGA--GCGGCG- -5'
19681 5' -54.6 NC_004686.1 + 37562 0.67 0.655388
Target:  5'- -aCGAgcCGCgAUCGaagcGaUCCUCGCCGCu -3'
miRNA:   3'- aaGCU--GCGgUAGUa---CaAGGAGCGGCG- -5'
19681 5' -54.6 NC_004686.1 + 6538 0.67 0.655388
Target:  5'- cUCG-CgGCUgaGUCGgucUUCCUCGCCGCa -3'
miRNA:   3'- aAGCuG-CGG--UAGUac-AAGGAGCGGCG- -5'
19681 5' -54.6 NC_004686.1 + 13229 0.67 0.655388
Target:  5'- gUUgGACGCCAcguUgGUG-UCUUCGCgGCg -3'
miRNA:   3'- -AAgCUGCGGU---AgUACaAGGAGCGgCG- -5'
19681 5' -54.6 NC_004686.1 + 42188 0.67 0.655388
Target:  5'- -gUGAUGUgcaCGUUgcGUUUCUCGCCGCg -3'
miRNA:   3'- aaGCUGCG---GUAGuaCAAGGAGCGGCG- -5'
19681 5' -54.6 NC_004686.1 + 52888 0.67 0.650957
Target:  5'- gUCgGGCGCCAggaucaugcggcgCAUGg--CUCGCCGCc -3'
miRNA:   3'- aAG-CUGCGGUa------------GUACaagGAGCGGCG- -5'
19681 5' -54.6 NC_004686.1 + 668 0.68 0.640979
Target:  5'- uUUCGAUGCCgaucgcuuccggaaGUCggGUUaacCCUgCGCCGCu -3'
miRNA:   3'- -AAGCUGCGG--------------UAGuaCAA---GGA-GCGGCG- -5'
19681 5' -54.6 NC_004686.1 + 31192 0.68 0.622118
Target:  5'- gUCcGCGCCAuuUCGUGcggccgUCgUCGCUGCg -3'
miRNA:   3'- aAGcUGCGGU--AGUACa-----AGgAGCGGCG- -5'
19681 5' -54.6 NC_004686.1 + 16504 0.69 0.577924
Target:  5'- --gGAUGggGUCGUGggCUUCGCCGCg -3'
miRNA:   3'- aagCUGCggUAGUACaaGGAGCGGCG- -5'
19681 5' -54.6 NC_004686.1 + 21142 0.69 0.545223
Target:  5'- -aCGACGCgGcuaaggguggUCAggcguUGUUCCgCGCCGCg -3'
miRNA:   3'- aaGCUGCGgU----------AGU-----ACAAGGaGCGGCG- -5'
19681 5' -54.6 NC_004686.1 + 34344 0.69 0.538751
Target:  5'- gUUCGAgCGCCGUCcgGagCCgccgcccgcgcccgCGCCGCc -3'
miRNA:   3'- -AAGCU-GCGGUAGuaCaaGGa-------------GCGGCG- -5'
19681 5' -54.6 NC_004686.1 + 55219 0.7 0.523755
Target:  5'- aUCGGCGCCGUCAacaucgUCUC-CCGCc -3'
miRNA:   3'- aAGCUGCGGUAGUacaa--GGAGcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.