miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19682 5' -59.4 NC_004686.1 + 55170 0.66 0.500988
Target:  5'- cGAacCGGCA-GCCGCCgacGCC-CACCa- -3'
miRNA:   3'- aCUa-GCCGUuCGGCGG---CGGuGUGGcu -5'
19682 5' -59.4 NC_004686.1 + 5236 0.66 0.500988
Target:  5'- cUGAUCGGCAuccacGGCaucaacCCGCU-CACCGGu -3'
miRNA:   3'- -ACUAGCCGU-----UCGgc----GGCGGuGUGGCU- -5'
19682 5' -59.4 NC_004686.1 + 34184 0.66 0.49092
Target:  5'- -cGUCGGC--GCCGUCcuuGCCGuCACCGGa -3'
miRNA:   3'- acUAGCCGuuCGGCGG---CGGU-GUGGCU- -5'
19682 5' -59.4 NC_004686.1 + 29600 0.66 0.49092
Target:  5'- cGAUCGGCGGG-UGCuCGCCAggaaACaCGAa -3'
miRNA:   3'- aCUAGCCGUUCgGCG-GCGGUg---UG-GCU- -5'
19682 5' -59.4 NC_004686.1 + 32056 0.66 0.49092
Target:  5'- gGGUUGGUuucucAGGCCuUCGCCcCGCCGGg -3'
miRNA:   3'- aCUAGCCG-----UUCGGcGGCGGuGUGGCU- -5'
19682 5' -59.4 NC_004686.1 + 16387 0.66 0.49092
Target:  5'- aUGAUCGGUGcuUCGUCGUCACggucccacaaGCCGAu -3'
miRNA:   3'- -ACUAGCCGUucGGCGGCGGUG----------UGGCU- -5'
19682 5' -59.4 NC_004686.1 + 12339 0.66 0.49092
Target:  5'- gGggCGGCuauGCCgGCgGCCACgacgACCGGu -3'
miRNA:   3'- aCuaGCCGuu-CGG-CGgCGGUG----UGGCU- -5'
19682 5' -59.4 NC_004686.1 + 38956 0.66 0.49092
Target:  5'- aGcgUGGCGAGCUggcaccggugaaGCCgGCCAgguuCACCGAc -3'
miRNA:   3'- aCuaGCCGUUCGG------------CGG-CGGU----GUGGCU- -5'
19682 5' -59.4 NC_004686.1 + 22193 0.66 0.49092
Target:  5'- uUGA-CGGCAucaaGGCCGCCaacgGCUGguCCGAu -3'
miRNA:   3'- -ACUaGCCGU----UCGGCGG----CGGUguGGCU- -5'
19682 5' -59.4 NC_004686.1 + 3295 0.66 0.49092
Target:  5'- aGG-CGGCGAGCCaugcGCCgcaugauccugGCCGC-CCGAc -3'
miRNA:   3'- aCUaGCCGUUCGG----CGG-----------CGGUGuGGCU- -5'
19682 5' -59.4 NC_004686.1 + 12523 0.66 0.480947
Target:  5'- cUGggCcGCAGGCUGCCaGCCA-GCCGGu -3'
miRNA:   3'- -ACuaGcCGUUCGGCGG-CGGUgUGGCU- -5'
19682 5' -59.4 NC_004686.1 + 21482 0.66 0.480947
Target:  5'- ---cCGGCGAacuucuGCCGCUGCC--ACCGAu -3'
miRNA:   3'- acuaGCCGUU------CGGCGGCGGugUGGCU- -5'
19682 5' -59.4 NC_004686.1 + 25446 0.66 0.480947
Target:  5'- ---gCGGCAAGCCuugucGCCGaccuCCGCGuCCGAc -3'
miRNA:   3'- acuaGCCGUUCGG-----CGGC----GGUGU-GGCU- -5'
19682 5' -59.4 NC_004686.1 + 3981 0.66 0.471074
Target:  5'- gGAUCcGCAGGCCGCggauacaugCGgCGCACCc- -3'
miRNA:   3'- aCUAGcCGUUCGGCG---------GCgGUGUGGcu -5'
19682 5' -59.4 NC_004686.1 + 40504 0.66 0.471074
Target:  5'- --uUCGGCcuGCUGCUGCgGCgucaGCCGGg -3'
miRNA:   3'- acuAGCCGuuCGGCGGCGgUG----UGGCU- -5'
19682 5' -59.4 NC_004686.1 + 41685 0.66 0.471074
Target:  5'- aGGUUGGC--GCCG-CGCCACGgcuCCGGa -3'
miRNA:   3'- aCUAGCCGuuCGGCgGCGGUGU---GGCU- -5'
19682 5' -59.4 NC_004686.1 + 19311 0.66 0.471074
Target:  5'- uUGAUCGGgAAGCCgaucgGCCGUgguUAC-CCGGa -3'
miRNA:   3'- -ACUAGCCgUUCGG-----CGGCG---GUGuGGCU- -5'
19682 5' -59.4 NC_004686.1 + 25237 0.67 0.461305
Target:  5'- cUGAUC-----GCCGCCGCUGCugCGAa -3'
miRNA:   3'- -ACUAGccguuCGGCGGCGGUGugGCU- -5'
19682 5' -59.4 NC_004686.1 + 50411 0.67 0.461305
Target:  5'- uUGAUCGaGaGAGCCGCgcaaaGCCAuCugCGAa -3'
miRNA:   3'- -ACUAGC-CgUUCGGCGg----CGGU-GugGCU- -5'
19682 5' -59.4 NC_004686.1 + 34295 0.67 0.461305
Target:  5'- cGAUauaGGCAccGCCaCCGCCAcCGCCGc -3'
miRNA:   3'- aCUAg--CCGUu-CGGcGGCGGU-GUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.