miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19683 5' -56.9 NC_004686.1 + 29583 0.66 0.678316
Target:  5'- cGGCCCGgGCugcgguucgaUCGgcgGGUgcucGCCAGGAaacACGa -3'
miRNA:   3'- -CCGGGCaUG----------AGCa--CCG----UGGUCCU---UGC- -5'
19683 5' -56.9 NC_004686.1 + 32531 0.66 0.667608
Target:  5'- cGGCCac-GCUCGUGGUGCCcgucAGGGu-- -3'
miRNA:   3'- -CCGGgcaUGAGCACCGUGG----UCCUugc -5'
19683 5' -56.9 NC_004686.1 + 4954 0.66 0.655791
Target:  5'- gGGCCgcuuagcCGU--UCGUGGCuGCCGGGGAUc -3'
miRNA:   3'- -CCGG-------GCAugAGCACCG-UGGUCCUUGc -5'
19683 5' -56.9 NC_004686.1 + 34966 0.66 0.635329
Target:  5'- -aUCCGUACgcCGUGGC-CCAGGcACc -3'
miRNA:   3'- ccGGGCAUGa-GCACCGuGGUCCuUGc -5'
19683 5' -56.9 NC_004686.1 + 26246 0.67 0.603025
Target:  5'- cGGCaCCGUcACaaUCGUGGCugUcGGggUGu -3'
miRNA:   3'- -CCG-GGCA-UG--AGCACCGugGuCCuuGC- -5'
19683 5' -56.9 NC_004686.1 + 4929 0.67 0.592293
Target:  5'- uGCCCG-GCgUGUGGCAgaaggcUCAGGGACa -3'
miRNA:   3'- cCGGGCaUGaGCACCGU------GGUCCUUGc -5'
19683 5' -56.9 NC_004686.1 + 16268 0.68 0.560322
Target:  5'- cGGUUCGUGCgcgUGUGGgACgGGGAuACGu -3'
miRNA:   3'- -CCGGGCAUGa--GCACCgUGgUCCU-UGC- -5'
19683 5' -56.9 NC_004686.1 + 39740 0.68 0.549765
Target:  5'- cGGCCCGccUGCUCGacgacGGCGCCuccuacacGGAcgccGCGg -3'
miRNA:   3'- -CCGGGC--AUGAGCa----CCGUGGu-------CCU----UGC- -5'
19683 5' -56.9 NC_004686.1 + 4615 0.68 0.539271
Target:  5'- cGCCCGaUACUCGUcgGGguCUuGGAugGg -3'
miRNA:   3'- cCGGGC-AUGAGCA--CCguGGuCCUugC- -5'
19683 5' -56.9 NC_004686.1 + 22699 0.68 0.528846
Target:  5'- gGGCaccaUGUGCUCGgccugccaGcGCAgCCAGGGACGg -3'
miRNA:   3'- -CCGg---GCAUGAGCa-------C-CGU-GGUCCUUGC- -5'
19683 5' -56.9 NC_004686.1 + 47721 0.68 0.508228
Target:  5'- gGGUucUCGUugU-GUGGUugCGGGGACGa -3'
miRNA:   3'- -CCG--GGCAugAgCACCGugGUCCUUGC- -5'
19683 5' -56.9 NC_004686.1 + 52869 0.7 0.402023
Target:  5'- uGGCCgGUcggaaugaaACgUCG-GGCGCCAGGAucauGCGg -3'
miRNA:   3'- -CCGGgCA---------UG-AGCaCCGUGGUCCU----UGC- -5'
19683 5' -56.9 NC_004686.1 + 30093 1.1 0.000646
Target:  5'- aGGCCCGUACUCGUGGCACCAGGAACGu -3'
miRNA:   3'- -CCGGGCAUGAGCACCGUGGUCCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.