Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 19685 | 3' | -52.9 | NC_004686.1 | + | 48369 | 0.66 | 0.833456 |
|
Target: 5'- uCACGCUGAAUgUUguugacgaaUCCGUCAUCAc -3' miRNA: 3'- cGUGCGGCUUAgAAg--------AGGCAGUGGUu -5' |
|||||||
| 19685 | 3' | -52.9 | NC_004686.1 | + | 32370 | 0.66 | 0.805164 |
|
Target: 5'- cGUGCGCCu--UCUcggcUCUCCGcUCGCCGc -3' miRNA: 3'- -CGUGCGGcuuAGA----AGAGGC-AGUGGUu -5' |
|||||||
| 19685 | 3' | -52.9 | NC_004686.1 | + | 36379 | 0.67 | 0.78534 |
|
Target: 5'- cGCGCuGCCGGA-CUUCgUCGUCGuCCAu -3' miRNA: 3'- -CGUG-CGGCUUaGAAGaGGCAGU-GGUu -5' |
|||||||
| 19685 | 3' | -52.9 | NC_004686.1 | + | 48792 | 0.67 | 0.77926 |
|
Target: 5'- aUACGCCGAauacccggacgaaugGUCUUCgaguaCCG-CGCCAGa -3' miRNA: 3'- cGUGCGGCU---------------UAGAAGa----GGCaGUGGUU- -5' |
|||||||
| 19685 | 3' | -52.9 | NC_004686.1 | + | 34175 | 0.67 | 0.754391 |
|
Target: 5'- aCGCGCCGccGUCggcgccgUCcuugCCGUCACCGGa -3' miRNA: 3'- cGUGCGGCu-UAGa------AGa---GGCAGUGGUU- -5' |
|||||||
| 19685 | 3' | -52.9 | NC_004686.1 | + | 48476 | 0.68 | 0.722274 |
|
Target: 5'- -gGCGCCGAAaaacgCUUCGUCAUCAGc -3' miRNA: 3'- cgUGCGGCUUagaa-GAGGCAGUGGUU- -5' |
|||||||
| 19685 | 3' | -52.9 | NC_004686.1 | + | 48123 | 0.68 | 0.700375 |
|
Target: 5'- aGCAUG-CGggUCUUCaccCCGUCgACCAc -3' miRNA: 3'- -CGUGCgGCuuAGAAGa--GGCAG-UGGUu -5' |
|||||||
| 19685 | 3' | -52.9 | NC_004686.1 | + | 39846 | 0.7 | 0.577424 |
|
Target: 5'- -gAUGCUGAAUCgccaCCGUCACCGAc -3' miRNA: 3'- cgUGCGGCUUAGaagaGGCAGUGGUU- -5' |
|||||||
| 19685 | 3' | -52.9 | NC_004686.1 | + | 31059 | 1.08 | 0.001917 |
|
Target: 5'- aGCACGCCGAAUCUUCUCCGUCACCAAc -3' miRNA: 3'- -CGUGCGGCUUAGAAGAGGCAGUGGUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home