miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19685 5' -49.9 NC_004686.1 + 8875 0.66 0.940549
Target:  5'- uCCUCGacggAGAGCAcgGGGggGCcauccGCGcCg -3'
miRNA:   3'- -GGAGU----UCUCGUaaCUCuuCGa----CGCuG- -5'
19685 5' -49.9 NC_004686.1 + 1219 0.66 0.922813
Target:  5'- aCCUgAAGgauucGGCGUUGAcGGAcaugcucGCUGCGAUg -3'
miRNA:   3'- -GGAgUUC-----UCGUAACU-CUU-------CGACGCUG- -5'
19685 5' -49.9 NC_004686.1 + 14840 0.67 0.903595
Target:  5'- aCCUCcgcAGcAGCAgcGAGAagAGCaGCGGCg -3'
miRNA:   3'- -GGAGu--UC-UCGUaaCUCU--UCGaCGCUG- -5'
19685 5' -49.9 NC_004686.1 + 42682 0.67 0.896388
Target:  5'- gUCUCGuGAuGUGUUGAcGggGUUGUGGCg -3'
miRNA:   3'- -GGAGUuCU-CGUAACU-CuuCGACGCUG- -5'
19685 5' -49.9 NC_004686.1 + 426 0.67 0.896388
Target:  5'- --gUAGGGGCGUUGgcguccgagguAGAGGCUGaCGAUg -3'
miRNA:   3'- ggaGUUCUCGUAAC-----------UCUUCGAC-GCUG- -5'
19685 5' -49.9 NC_004686.1 + 33621 0.67 0.896388
Target:  5'- cCCgaCAAGGGCuggccgccggugAUggUGAGGgcGGCUGCGGCg -3'
miRNA:   3'- -GGa-GUUCUCG------------UA--ACUCU--UCGACGCUG- -5'
19685 5' -49.9 NC_004686.1 + 10899 0.67 0.888888
Target:  5'- uCCUCGAa--CAagGAG-AGCUGCGACg -3'
miRNA:   3'- -GGAGUUcucGUaaCUCuUCGACGCUG- -5'
19685 5' -49.9 NC_004686.1 + 17155 0.7 0.757674
Target:  5'- cCCUCAgucGGAGU---GGGAAGCcGCGAUg -3'
miRNA:   3'- -GGAGU---UCUCGuaaCUCUUCGaCGCUG- -5'
19685 5' -49.9 NC_004686.1 + 52644 0.7 0.746852
Target:  5'- -----cGAGCAUUGuuGAGGCUGCGGa -3'
miRNA:   3'- ggaguuCUCGUAACu-CUUCGACGCUg -5'
19685 5' -49.9 NC_004686.1 + 49599 0.73 0.622252
Target:  5'- uCCUC-GGAuGCGga-AGggGCUGCGACu -3'
miRNA:   3'- -GGAGuUCU-CGUaacUCuuCGACGCUG- -5'
19685 5' -49.9 NC_004686.1 + 17871 0.75 0.466365
Target:  5'- gCCUCAAcGAGCGgacaccGAGGAacGCUGCGAUg -3'
miRNA:   3'- -GGAGUU-CUCGUaa----CUCUU--CGACGCUG- -5'
19685 5' -49.9 NC_004686.1 + 31093 1.11 0.00231
Target:  5'- uCCUCAAGAGCAUUGAGAAGCUGCGACc -3'
miRNA:   3'- -GGAGUUCUCGUAACUCUUCGACGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.