miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19686 3' -47.8 NC_004686.1 + 2662 0.66 0.981381
Target:  5'- gGCCGGUUUGGuuGCGGGUUcguuuguGGCGUu -3'
miRNA:   3'- aCGGUCAAGUCugCGUUUAAu------CUGCA- -5'
19686 3' -47.8 NC_004686.1 + 53737 0.66 0.981381
Target:  5'- cGCCAGaucuacaaUCAGAuCGCGAAgcuuGACGa -3'
miRNA:   3'- aCGGUCa-------AGUCU-GCGUUUaau-CUGCa -5'
19686 3' -47.8 NC_004686.1 + 39176 0.67 0.962801
Target:  5'- gUGCCGa--CGGGCGCAGAggugGGGCGc -3'
miRNA:   3'- -ACGGUcaaGUCUGCGUUUaa--UCUGCa -5'
19686 3' -47.8 NC_004686.1 + 50883 0.67 0.958764
Target:  5'- gUGCCGGUggUCAgcuGACGau-GUUGGugGUg -3'
miRNA:   3'- -ACGGUCA--AGU---CUGCguuUAAUCugCA- -5'
19686 3' -47.8 NC_004686.1 + 16263 0.67 0.954435
Target:  5'- cUGuCCGGUUCGuGCGCGugugGGACGg -3'
miRNA:   3'- -AC-GGUCAAGUcUGCGUuuaaUCUGCa -5'
19686 3' -47.8 NC_004686.1 + 33536 0.68 0.944881
Target:  5'- cGCCGGUUCGauGAUGCGGgccugccgaauGUUGGGCu- -3'
miRNA:   3'- aCGGUCAAGU--CUGCGUU-----------UAAUCUGca -5'
19686 3' -47.8 NC_004686.1 + 50687 0.68 0.944881
Target:  5'- cGCCGcGUUCAGGCcgGCGAAggaagcGACGUc -3'
miRNA:   3'- aCGGU-CAAGUCUG--CGUUUaau---CUGCA- -5'
19686 3' -47.8 NC_004686.1 + 45555 0.68 0.939646
Target:  5'- aGCCAGagagGGGCGCA--UUGGGCGa -3'
miRNA:   3'- aCGGUCaag-UCUGCGUuuAAUCUGCa -5'
19686 3' -47.8 NC_004686.1 + 9455 0.68 0.934101
Target:  5'- gGCUGGUgCAGACGCcgcucAGGCGUa -3'
miRNA:   3'- aCGGUCAaGUCUGCGuuuaaUCUGCA- -5'
19686 3' -47.8 NC_004686.1 + 30735 0.7 0.878597
Target:  5'- aGCCAuGUgUCGGACGCGGAggucGGCGa -3'
miRNA:   3'- aCGGU-CA-AGUCUGCGUUUaau-CUGCa -5'
19686 3' -47.8 NC_004686.1 + 33195 0.7 0.861749
Target:  5'- aGCCGGUaUAGGCGCAGGguuccguuGGCGg -3'
miRNA:   3'- aCGGUCAaGUCUGCGUUUaau-----CUGCa -5'
19686 3' -47.8 NC_004686.1 + 31912 0.71 0.824882
Target:  5'- gGCCGGUUCcGugGUugucgcacauccGGGUUGGGCGUc -3'
miRNA:   3'- aCGGUCAAGuCugCG------------UUUAAUCUGCA- -5'
19686 3' -47.8 NC_004686.1 + 31409 1.08 0.006435
Target:  5'- gUGCCAGUUCAGACGCAAAUUAGACGUc -3'
miRNA:   3'- -ACGGUCAAGUCUGCGUUUAAUCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.