miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19687 5' -56.5 NC_004686.1 + 3905 0.66 0.665873
Target:  5'- gGCAuUCGCaGCCGAGg---GGGCCg- -3'
miRNA:   3'- aCGU-AGCGgCGGCUUaaugCCCGGac -5'
19687 5' -56.5 NC_004686.1 + 41052 0.66 0.643995
Target:  5'- -cCGUUGUCGCCGAucaggUACGGGgCa- -3'
miRNA:   3'- acGUAGCGGCGGCUua---AUGCCCgGac -5'
19687 5' -56.5 NC_004686.1 + 33461 0.66 0.611123
Target:  5'- aGCcgCGgCGCCGGGgguuagGCGGGUgagCUGa -3'
miRNA:   3'- aCGuaGCgGCGGCUUaa----UGCCCG---GAC- -5'
19687 5' -56.5 NC_004686.1 + 41992 0.67 0.60019
Target:  5'- gGCugaaggUGCCGCCGAcgagUACGGGgCa- -3'
miRNA:   3'- aCGua----GCGGCGGCUua--AUGCCCgGac -5'
19687 5' -56.5 NC_004686.1 + 34068 0.67 0.589283
Target:  5'- aGCggUGCCGCCGAGgccGCGcGcGCCa- -3'
miRNA:   3'- aCGuaGCGGCGGCUUaa-UGC-C-CGGac -5'
19687 5' -56.5 NC_004686.1 + 44029 0.67 0.546095
Target:  5'- uUGCGaaCGCCGCCGcuggcccCGcGGCCUGa -3'
miRNA:   3'- -ACGUa-GCGGCGGCuuaau--GC-CCGGAC- -5'
19687 5' -56.5 NC_004686.1 + 2646 0.67 0.546095
Target:  5'- aGCGguucgCGCUGCCGGccgguuugGUUGCGGGUUc- -3'
miRNA:   3'- aCGUa----GCGGCGGCU--------UAAUGCCCGGac -5'
19687 5' -56.5 NC_004686.1 + 162 0.68 0.514377
Target:  5'- gGCGaCGCgGCCGggUUgGCGGGUg-- -3'
miRNA:   3'- aCGUaGCGgCGGCuuAA-UGCCCGgac -5'
19687 5' -56.5 NC_004686.1 + 34401 0.69 0.463312
Target:  5'- gUGCGUCG-CGCCGAcaggggUugGGGCgUUGg -3'
miRNA:   3'- -ACGUAGCgGCGGCUua----AugCCCG-GAC- -5'
19687 5' -56.5 NC_004686.1 + 19875 0.69 0.433977
Target:  5'- -uCGUCGCUcagggcaugGCCGAuggUGCGGGgCCUGg -3'
miRNA:   3'- acGUAGCGG---------CGGCUua-AUGCCC-GGAC- -5'
19687 5' -56.5 NC_004686.1 + 13255 0.7 0.378704
Target:  5'- gGCGagaGCCGCCGAGagcccgGGGCCUGc -3'
miRNA:   3'- aCGUag-CGGCGGCUUaaug--CCCGGAC- -5'
19687 5' -56.5 NC_004686.1 + 35171 0.7 0.378704
Target:  5'- gGUA-CGCCGCCGA--UACGGauauugcgcuGCCUGa -3'
miRNA:   3'- aCGUaGCGGCGGCUuaAUGCC----------CGGAC- -5'
19687 5' -56.5 NC_004686.1 + 34226 0.72 0.308129
Target:  5'- cGCcagCGCCGCCGAGUccgcgcgucguugagUAcguCGGGCCUa -3'
miRNA:   3'- aCGua-GCGGCGGCUUA---------------AU---GCCCGGAc -5'
19687 5' -56.5 NC_004686.1 + 16457 0.73 0.283134
Target:  5'- gGCGcCGUCGUCGAGcagGCGGGCCg- -3'
miRNA:   3'- aCGUaGCGGCGGCUUaa-UGCCCGGac -5'
19687 5' -56.5 NC_004686.1 + 33530 0.75 0.207686
Target:  5'- cGC--UGCCGCCGGuucgaugaUGCGGGCCUGc -3'
miRNA:   3'- aCGuaGCGGCGGCUua------AUGCCCGGAC- -5'
19687 5' -56.5 NC_004686.1 + 46979 0.78 0.120394
Target:  5'- gUGCAcggCGCCGCCGAAUgugAUcGGCCUGu -3'
miRNA:   3'- -ACGUa--GCGGCGGCUUAa--UGcCCGGAC- -5'
19687 5' -56.5 NC_004686.1 + 33719 0.8 0.098892
Target:  5'- gGuCAUCGCCGCCGGG--GCGGGgCUGa -3'
miRNA:   3'- aC-GUAGCGGCGGCUUaaUGCCCgGAC- -5'
19687 5' -56.5 NC_004686.1 + 31571 1.09 0.000785
Target:  5'- cUGCAUCGCCGCCGAAUUACGGGCCUGa -3'
miRNA:   3'- -ACGUAGCGGCGGCUUAAUGCCCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.