miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19688 3' -62 NC_004686.1 + 21474 0.66 0.409098
Target:  5'- uGCCGUaGCCGgCGaacuucUGCCGCuGCCa -3'
miRNA:   3'- gUGGCAgCGGCgGCau----ACGGCG-CGGc -5'
19688 3' -62 NC_004686.1 + 19548 0.66 0.409098
Target:  5'- cCGCCGaCGCCGCCGgaaacgGuuGUGgUGg -3'
miRNA:   3'- -GUGGCaGCGGCGGCaua---CggCGCgGC- -5'
19688 3' -62 NC_004686.1 + 26248 0.66 0.409098
Target:  5'- gCACCGUCacaaucgugGCUGUCGgggUGUGCUGgcaCGCCGg -3'
miRNA:   3'- -GUGGCAG---------CGGCGGC---AUACGGC---GCGGC- -5'
19688 3' -62 NC_004686.1 + 43858 0.66 0.400332
Target:  5'- -gUCGUgGCCGCCGgcauaGCCGCcCCu -3'
miRNA:   3'- guGGCAgCGGCGGCaua--CGGCGcGGc -5'
19688 3' -62 NC_004686.1 + 23742 0.66 0.391688
Target:  5'- aCAUCGUCGCCGUCaUcgGgCGCaagaaacuuGCCGa -3'
miRNA:   3'- -GUGGCAGCGGCGGcAuaCgGCG---------CGGC- -5'
19688 3' -62 NC_004686.1 + 35310 0.67 0.366496
Target:  5'- gGCUGagGCUGCCGgugacUAUGCgGUGUCGg -3'
miRNA:   3'- gUGGCagCGGCGGC-----AUACGgCGCGGC- -5'
19688 3' -62 NC_004686.1 + 5543 0.67 0.366496
Target:  5'- aCACCGUCcgugGCgGCCcggaggcUGUGaCCGCGUCGa -3'
miRNA:   3'- -GUGGCAG----CGgCGGc------AUAC-GGCGCGGC- -5'
19688 3' -62 NC_004686.1 + 51367 0.67 0.35835
Target:  5'- aACCGcCGCCGCUGaagaagGuCCGCGCg- -3'
miRNA:   3'- gUGGCaGCGGCGGCaua---C-GGCGCGgc -5'
19688 3' -62 NC_004686.1 + 52203 0.67 0.35835
Target:  5'- gGCCGggugCGCCGCaUGUAU-CCGCGUg- -3'
miRNA:   3'- gUGGCa---GCGGCG-GCAUAcGGCGCGgc -5'
19688 3' -62 NC_004686.1 + 4708 0.67 0.350332
Target:  5'- gACCG-CGCCGCggagcaggCGaAUGCCGagGCCGa -3'
miRNA:   3'- gUGGCaGCGGCG--------GCaUACGGCg-CGGC- -5'
19688 3' -62 NC_004686.1 + 44059 0.67 0.327051
Target:  5'- gACCGcCGgCGCCGaaacUGCC-CGCCGu -3'
miRNA:   3'- gUGGCaGCgGCGGCau--ACGGcGCGGC- -5'
19688 3' -62 NC_004686.1 + 44093 0.68 0.297119
Target:  5'- aGCCGaaGCCGCgGUA-GCCGCagcagaaGCCGc -3'
miRNA:   3'- gUGGCagCGGCGgCAUaCGGCG-------CGGC- -5'
19688 3' -62 NC_004686.1 + 33843 0.68 0.283986
Target:  5'- aGCCGUCaCCGCUGcc-GCC-CGCCGa -3'
miRNA:   3'- gUGGCAGcGGCGGCauaCGGcGCGGC- -5'
19688 3' -62 NC_004686.1 + 21731 0.69 0.264191
Target:  5'- -cCCGUCgGUCGCCGUGaagGCUGCGuUCGa -3'
miRNA:   3'- guGGCAG-CGGCGGCAUa--CGGCGC-GGC- -5'
19688 3' -62 NC_004686.1 + 56013 0.69 0.247346
Target:  5'- gCACCGUCGCCcacccgcCCGgcacccgccaacccgGCCGCGUCGc -3'
miRNA:   3'- -GUGGCAGCGGc------GGCaua------------CGGCGCGGC- -5'
19688 3' -62 NC_004686.1 + 2804 0.69 0.24553
Target:  5'- uGCCGgcgcaggUGuuGCCGUAcaaGCCuGCGCCGa -3'
miRNA:   3'- gUGGCa------GCggCGGCAUa--CGG-CGCGGC- -5'
19688 3' -62 NC_004686.1 + 33944 0.7 0.233707
Target:  5'- uGCCGcCGCCGCCcuuaccGCCaGCGCCc -3'
miRNA:   3'- gUGGCaGCGGCGGcaua--CGG-CGCGGc -5'
19688 3' -62 NC_004686.1 + 31210 0.7 0.227976
Target:  5'- gGCCGUCGUCGCUGcg-GgCGCGCa- -3'
miRNA:   3'- gUGGCAGCGGCGGCauaCgGCGCGgc -5'
19688 3' -62 NC_004686.1 + 54967 0.7 0.227976
Target:  5'- aACCGcagCGCCGCCuacaaCCGCGCCa -3'
miRNA:   3'- gUGGCa--GCGGCGGcauacGGCGCGGc -5'
19688 3' -62 NC_004686.1 + 33708 0.7 0.222365
Target:  5'- cCACCGgugacggucaUCGCCGCCGgg-GCgGgGCUGa -3'
miRNA:   3'- -GUGGC----------AGCGGCGGCauaCGgCgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.