Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19688 | 3' | -62 | NC_004686.1 | + | 21474 | 0.66 | 0.409098 |
Target: 5'- uGCCGUaGCCGgCGaacuucUGCCGCuGCCa -3' miRNA: 3'- gUGGCAgCGGCgGCau----ACGGCG-CGGc -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 23742 | 0.66 | 0.391688 |
Target: 5'- aCAUCGUCGCCGUCaUcgGgCGCaagaaacuuGCCGa -3' miRNA: 3'- -GUGGCAGCGGCGGcAuaCgGCG---------CGGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 43858 | 0.66 | 0.400332 |
Target: 5'- -gUCGUgGCCGCCGgcauaGCCGCcCCu -3' miRNA: 3'- guGGCAgCGGCGGCaua--CGGCGcGGc -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 19548 | 0.66 | 0.409098 |
Target: 5'- cCGCCGaCGCCGCCGgaaacgGuuGUGgUGg -3' miRNA: 3'- -GUGGCaGCGGCGGCaua---CggCGCgGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 26248 | 0.66 | 0.409098 |
Target: 5'- gCACCGUCacaaucgugGCUGUCGgggUGUGCUGgcaCGCCGg -3' miRNA: 3'- -GUGGCAG---------CGGCGGC---AUACGGC---GCGGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 51367 | 0.67 | 0.35835 |
Target: 5'- aACCGcCGCCGCUGaagaagGuCCGCGCg- -3' miRNA: 3'- gUGGCaGCGGCGGCaua---C-GGCGCGgc -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 5543 | 0.67 | 0.366496 |
Target: 5'- aCACCGUCcgugGCgGCCcggaggcUGUGaCCGCGUCGa -3' miRNA: 3'- -GUGGCAG----CGgCGGc------AUAC-GGCGCGGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 35310 | 0.67 | 0.366496 |
Target: 5'- gGCUGagGCUGCCGgugacUAUGCgGUGUCGg -3' miRNA: 3'- gUGGCagCGGCGGC-----AUACGgCGCGGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 4708 | 0.67 | 0.350332 |
Target: 5'- gACCG-CGCCGCggagcaggCGaAUGCCGagGCCGa -3' miRNA: 3'- gUGGCaGCGGCG--------GCaUACGGCg-CGGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 44059 | 0.67 | 0.327051 |
Target: 5'- gACCGcCGgCGCCGaaacUGCC-CGCCGu -3' miRNA: 3'- gUGGCaGCgGCGGCau--ACGGcGCGGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 52203 | 0.67 | 0.35835 |
Target: 5'- gGCCGggugCGCCGCaUGUAU-CCGCGUg- -3' miRNA: 3'- gUGGCa---GCGGCG-GCAUAcGGCGCGgc -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 44093 | 0.68 | 0.297119 |
Target: 5'- aGCCGaaGCCGCgGUA-GCCGCagcagaaGCCGc -3' miRNA: 3'- gUGGCagCGGCGgCAUaCGGCG-------CGGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 33843 | 0.68 | 0.283986 |
Target: 5'- aGCCGUCaCCGCUGcc-GCC-CGCCGa -3' miRNA: 3'- gUGGCAGcGGCGGCauaCGGcGCGGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 21731 | 0.69 | 0.264191 |
Target: 5'- -cCCGUCgGUCGCCGUGaagGCUGCGuUCGa -3' miRNA: 3'- guGGCAG-CGGCGGCAUa--CGGCGC-GGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 2804 | 0.69 | 0.24553 |
Target: 5'- uGCCGgcgcaggUGuuGCCGUAcaaGCCuGCGCCGa -3' miRNA: 3'- gUGGCa------GCggCGGCAUa--CGG-CGCGGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 56013 | 0.69 | 0.247346 |
Target: 5'- gCACCGUCGCCcacccgcCCGgcacccgccaacccgGCCGCGUCGc -3' miRNA: 3'- -GUGGCAGCGGc------GGCaua------------CGGCGCGGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 38650 | 0.7 | 0.206234 |
Target: 5'- -uUCGUCGCCGCUgcggaaucgguGUAuUGcCCGCGCCa -3' miRNA: 3'- guGGCAGCGGCGG-----------CAU-AC-GGCGCGGc -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 31210 | 0.7 | 0.227976 |
Target: 5'- gGCCGUCGUCGCUGcg-GgCGCGCa- -3' miRNA: 3'- gUGGCAGCGGCGGCauaCgGCGCGgc -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 54967 | 0.7 | 0.227976 |
Target: 5'- aACCGcagCGCCGCCuacaaCCGCGCCa -3' miRNA: 3'- gUGGCa--GCGGCGGcauacGGCGCGGc -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 33944 | 0.7 | 0.233707 |
Target: 5'- uGCCGcCGCCGCCcuuaccGCCaGCGCCc -3' miRNA: 3'- gUGGCaGCGGCGGcaua--CGG-CGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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