Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
19688 | 3' | -62 | NC_004686.1 | + | 54967 | 0.7 | 0.227976 |
Target: 5'- aACCGcagCGCCGCCuacaaCCGCGCCa -3' miRNA: 3'- gUGGCa--GCGGCGGcauacGGCGCGGc -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 31210 | 0.7 | 0.227976 |
Target: 5'- gGCCGUCGUCGCUGcg-GgCGCGCa- -3' miRNA: 3'- gUGGCAGCGGCGGCauaCgGCGCGgc -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 38650 | 0.7 | 0.206234 |
Target: 5'- -uUCGUCGCCGCUgcggaaucgguGUAuUGcCCGCGCCa -3' miRNA: 3'- guGGCAGCGGCGG-----------CAU-AC-GGCGCGGc -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 34055 | 0.71 | 0.199059 |
Target: 5'- gGCCGgugaugacagcggUGCCGCCGag-GCCGCGCgCGc -3' miRNA: 3'- gUGGCa------------GCGGCGGCauaCGGCGCG-GC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 25234 | 0.71 | 0.196051 |
Target: 5'- cCACUGaUCGCCGCCGc-UGCUGCgaaagcacugGCCGa -3' miRNA: 3'- -GUGGC-AGCGGCGGCauACGGCG----------CGGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 34222 | 0.72 | 0.172498 |
Target: 5'- gCACCGccagCGCCGCCGaGU-CCGCGCg- -3' miRNA: 3'- -GUGGCa---GCGGCGGCaUAcGGCGCGgc -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 16517 | 0.73 | 0.147593 |
Target: 5'- gGCU-UCGCCGCgGcugAUGCCGUGCCGc -3' miRNA: 3'- gUGGcAGCGGCGgCa--UACGGCGCGGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 40420 | 0.73 | 0.147593 |
Target: 5'- uCACCauGUCGUCGUagCGUGUGCCGUagucGCCGa -3' miRNA: 3'- -GUGG--CAGCGGCG--GCAUACGGCG----CGGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 34350 | 0.75 | 0.101763 |
Target: 5'- gCGCCGUCcggaGCCGCCGcccgcGcCCGCGCCGc -3' miRNA: 3'- -GUGGCAG----CGGCGGCaua--C-GGCGCGGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 33891 | 0.75 | 0.099061 |
Target: 5'- gGCCGUCGCUGguuCCGUuguUGCCGcCGCUGa -3' miRNA: 3'- gUGGCAGCGGC---GGCAu--ACGGC-GCGGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 34180 | 0.75 | 0.093859 |
Target: 5'- cCGCCGUCGgCGCCGUccuUGCCGUcaCCGg -3' miRNA: 3'- -GUGGCAGCgGCGGCAu--ACGGCGc-GGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 16429 | 0.76 | 0.081964 |
Target: 5'- cCACCGUCGCCGCggCGUccGUGUaggagGCGCCGu -3' miRNA: 3'- -GUGGCAGCGGCG--GCA--UACGg----CGCGGC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 34012 | 0.79 | 0.051412 |
Target: 5'- cCGCCGUUGCCGCCGU-UGCCGC-CgGa -3' miRNA: 3'- -GUGGCAGCGGCGGCAuACGGCGcGgC- -5' |
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19688 | 3' | -62 | NC_004686.1 | + | 31687 | 1.08 | 0.000319 |
Target: 5'- gCACCGUCGCCGCCGUAUGCCGCGCCGa -3' miRNA: 3'- -GUGGCAGCGGCGGCAUACGGCGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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