miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19688 3' -62 NC_004686.1 + 31687 1.08 0.000319
Target:  5'- gCACCGUCGCCGCCGUAUGCCGCGCCGa -3'
miRNA:   3'- -GUGGCAGCGGCGGCAUACGGCGCGGC- -5'
19688 3' -62 NC_004686.1 + 19548 0.66 0.409098
Target:  5'- cCGCCGaCGCCGCCGgaaacgGuuGUGgUGg -3'
miRNA:   3'- -GUGGCaGCGGCGGCaua---CggCGCgGC- -5'
19688 3' -62 NC_004686.1 + 26248 0.66 0.409098
Target:  5'- gCACCGUCacaaucgugGCUGUCGgggUGUGCUGgcaCGCCGg -3'
miRNA:   3'- -GUGGCAG---------CGGCGGC---AUACGGC---GCGGC- -5'
19688 3' -62 NC_004686.1 + 5543 0.67 0.366496
Target:  5'- aCACCGUCcgugGCgGCCcggaggcUGUGaCCGCGUCGa -3'
miRNA:   3'- -GUGGCAG----CGgCGGc------AUAC-GGCGCGGC- -5'
19688 3' -62 NC_004686.1 + 35310 0.67 0.366496
Target:  5'- gGCUGagGCUGCCGgugacUAUGCgGUGUCGg -3'
miRNA:   3'- gUGGCagCGGCGGC-----AUACGgCGCGGC- -5'
19688 3' -62 NC_004686.1 + 4708 0.67 0.350332
Target:  5'- gACCG-CGCCGCggagcaggCGaAUGCCGagGCCGa -3'
miRNA:   3'- gUGGCaGCGGCG--------GCaUACGGCg-CGGC- -5'
19688 3' -62 NC_004686.1 + 21731 0.69 0.264191
Target:  5'- -cCCGUCgGUCGCCGUGaagGCUGCGuUCGa -3'
miRNA:   3'- guGGCAG-CGGCGGCAUa--CGGCGC-GGC- -5'
19688 3' -62 NC_004686.1 + 56013 0.69 0.247346
Target:  5'- gCACCGUCGCCcacccgcCCGgcacccgccaacccgGCCGCGUCGc -3'
miRNA:   3'- -GUGGCAGCGGc------GGCaua------------CGGCGCGGC- -5'
19688 3' -62 NC_004686.1 + 2804 0.69 0.24553
Target:  5'- uGCCGgcgcaggUGuuGCCGUAcaaGCCuGCGCCGa -3'
miRNA:   3'- gUGGCa------GCggCGGCAUa--CGG-CGCGGC- -5'
19688 3' -62 NC_004686.1 + 54967 0.7 0.227976
Target:  5'- aACCGcagCGCCGCCuacaaCCGCGCCa -3'
miRNA:   3'- gUGGCa--GCGGCGGcauacGGCGCGGc -5'
19688 3' -62 NC_004686.1 + 31210 0.7 0.227976
Target:  5'- gGCCGUCGUCGCUGcg-GgCGCGCa- -3'
miRNA:   3'- gUGGCAGCGGCGGCauaCgGCGCGgc -5'
19688 3' -62 NC_004686.1 + 8443 0.7 0.211496
Target:  5'- cCACUGUCGgUGUCGU-UGCCGCGgUGg -3'
miRNA:   3'- -GUGGCAGCgGCGGCAuACGGCGCgGC- -5'
19688 3' -62 NC_004686.1 + 38650 0.7 0.206234
Target:  5'- -uUCGUCGCCGCUgcggaaucgguGUAuUGcCCGCGCCa -3'
miRNA:   3'- guGGCAGCGGCGG-----------CAU-AC-GGCGCGGc -5'
19688 3' -62 NC_004686.1 + 25234 0.71 0.196051
Target:  5'- cCACUGaUCGCCGCCGc-UGCUGCgaaagcacugGCCGa -3'
miRNA:   3'- -GUGGC-AGCGGCGGCauACGGCG----------CGGC- -5'
19688 3' -62 NC_004686.1 + 16517 0.73 0.147593
Target:  5'- gGCU-UCGCCGCgGcugAUGCCGUGCCGc -3'
miRNA:   3'- gUGGcAGCGGCGgCa--UACGGCGCGGC- -5'
19688 3' -62 NC_004686.1 + 34350 0.75 0.101763
Target:  5'- gCGCCGUCcggaGCCGCCGcccgcGcCCGCGCCGc -3'
miRNA:   3'- -GUGGCAG----CGGCGGCaua--C-GGCGCGGC- -5'
19688 3' -62 NC_004686.1 + 33891 0.75 0.099061
Target:  5'- gGCCGUCGCUGguuCCGUuguUGCCGcCGCUGa -3'
miRNA:   3'- gUGGCAGCGGC---GGCAu--ACGGC-GCGGC- -5'
19688 3' -62 NC_004686.1 + 34180 0.75 0.093859
Target:  5'- cCGCCGUCGgCGCCGUccuUGCCGUcaCCGg -3'
miRNA:   3'- -GUGGCAGCgGCGGCAu--ACGGCGc-GGC- -5'
19688 3' -62 NC_004686.1 + 16429 0.76 0.081964
Target:  5'- cCACCGUCGCCGCggCGUccGUGUaggagGCGCCGu -3'
miRNA:   3'- -GUGGCAGCGGCG--GCA--UACGg----CGCGGC- -5'
19688 3' -62 NC_004686.1 + 21474 0.66 0.409098
Target:  5'- uGCCGUaGCCGgCGaacuucUGCCGCuGCCa -3'
miRNA:   3'- gUGGCAgCGGCgGCau----ACGGCG-CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.