miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19688 5' -56.2 NC_004686.1 + 46414 0.66 0.668795
Target:  5'- -gCGGCGACCg--CAGUgGCGGCAGUg -3'
miRNA:   3'- caGUUGCUGGggaGUCGgCGCUGUUA- -5'
19688 5' -56.2 NC_004686.1 + 27348 0.66 0.657796
Target:  5'- cGUCAACGACCaCUUC-GCCGCc----- -3'
miRNA:   3'- -CAGUUGCUGG-GGAGuCGGCGcuguua -5'
19688 5' -56.2 NC_004686.1 + 56120 0.66 0.657796
Target:  5'- -cCGGCGAa-CCUCAGCCcGcCGACGAUc -3'
miRNA:   3'- caGUUGCUggGGAGUCGG-C-GCUGUUA- -5'
19688 5' -56.2 NC_004686.1 + 17548 0.66 0.657796
Target:  5'- -aCAcCGAUUCCgCAGCgGCGACGAa -3'
miRNA:   3'- caGUuGCUGGGGaGUCGgCGCUGUUa -5'
19688 5' -56.2 NC_004686.1 + 48175 0.66 0.657796
Target:  5'- -gCAGCGGCgCCUCA-UCGUGACGGa -3'
miRNA:   3'- caGUUGCUGgGGAGUcGGCGCUGUUa -5'
19688 5' -56.2 NC_004686.1 + 12463 0.66 0.635737
Target:  5'- -gCGGCGGCCCagguugCGuGCCGCGACc-- -3'
miRNA:   3'- caGUUGCUGGGga----GU-CGGCGCUGuua -5'
19688 5' -56.2 NC_004686.1 + 21547 0.66 0.624697
Target:  5'- aGUCGGgcaGACCCCUCGGuuGauACGAUu -3'
miRNA:   3'- -CAGUUg--CUGGGGAGUCggCgcUGUUA- -5'
19688 5' -56.2 NC_004686.1 + 39662 0.67 0.558921
Target:  5'- uGUCAcgggugaggguGCGGCacggcaUCAGCCGCGGCGAa -3'
miRNA:   3'- -CAGU-----------UGCUGggg---AGUCGGCGCUGUUa -5'
19688 5' -56.2 NC_004686.1 + 14210 0.68 0.53738
Target:  5'- cGUCGGCGGCaCCUUCAGCCcaguCGAUc-- -3'
miRNA:   3'- -CAGUUGCUG-GGGAGUCGGc---GCUGuua -5'
19688 5' -56.2 NC_004686.1 + 52293 0.69 0.484924
Target:  5'- aUCGGC--CCCCUCGGCUGCGAa--- -3'
miRNA:   3'- cAGUUGcuGGGGAGUCGGCGCUguua -5'
19688 5' -56.2 NC_004686.1 + 8531 0.69 0.454646
Target:  5'- cGUCAACGcauucaCCUUCGGCCGC-ACAAa -3'
miRNA:   3'- -CAGUUGCug----GGGAGUCGGCGcUGUUa -5'
19688 5' -56.2 NC_004686.1 + 39755 0.69 0.444782
Target:  5'- -aCGACGGCgCCUCcuacacggacGCCGCGGCGAc -3'
miRNA:   3'- caGUUGCUGgGGAGu---------CGGCGCUGUUa -5'
19688 5' -56.2 NC_004686.1 + 55603 0.69 0.435039
Target:  5'- -aCGACGGCaCCCUCGGgUGCGAgGGc -3'
miRNA:   3'- caGUUGCUG-GGGAGUCgGCGCUgUUa -5'
19688 5' -56.2 NC_004686.1 + 22284 0.71 0.370487
Target:  5'- -cCAACGACaacaCCaUCAGCgGCGGCAAc -3'
miRNA:   3'- caGUUGCUGg---GG-AGUCGgCGCUGUUa -5'
19688 5' -56.2 NC_004686.1 + 32322 0.73 0.262171
Target:  5'- -gCAGCaGCCCCUCAGCCaCGGCGu- -3'
miRNA:   3'- caGUUGcUGGGGAGUCGGcGCUGUua -5'
19688 5' -56.2 NC_004686.1 + 31721 1.05 0.00137
Target:  5'- cGUCAACGACCCCUCAGCCGCGACAAUc -3'
miRNA:   3'- -CAGUUGCUGGGGAGUCGGCGCUGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.