miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19689 5' -51.7 NC_004686.1 + 12589 0.66 0.911712
Target:  5'- cCUUCGACcagGGugGCGUGcuggaACCGg -3'
miRNA:   3'- -GAAGCUGaagCCugCGCACuug--UGGU- -5'
19689 5' -51.7 NC_004686.1 + 49619 0.66 0.905056
Target:  5'- gCUUCGGCUcCGucGACGaugGUGAGgACCAu -3'
miRNA:   3'- -GAAGCUGAaGC--CUGCg--CACUUgUGGU- -5'
19689 5' -51.7 NC_004686.1 + 39798 0.66 0.897412
Target:  5'- -aUCGGCUugUgGGAC-CGUGAcgacgaaGCACCGa -3'
miRNA:   3'- gaAGCUGA--AgCCUGcGCACU-------UGUGGU- -5'
19689 5' -51.7 NC_004686.1 + 36172 0.66 0.89091
Target:  5'- gUUCGACUgcUCGGACGaggGAAUGCa- -3'
miRNA:   3'- gAAGCUGA--AGCCUGCgcaCUUGUGgu -5'
19689 5' -51.7 NC_004686.1 + 14595 0.67 0.859407
Target:  5'- aCUUCGAUUUCGGugGgGUaGuuCGCUu -3'
miRNA:   3'- -GAAGCUGAAGCCugCgCA-CuuGUGGu -5'
19689 5' -51.7 NC_004686.1 + 43826 0.67 0.842157
Target:  5'- -cUgGACUUUGGaacagGCGCaUGAACACCu -3'
miRNA:   3'- gaAgCUGAAGCC-----UGCGcACUUGUGGu -5'
19689 5' -51.7 NC_004686.1 + 44510 0.67 0.842157
Target:  5'- -cUgGACUUUGGaacagGCGCaUGAACACCu -3'
miRNA:   3'- gaAgCUGAAGCC-----UGCGcACUUGUGGu -5'
19689 5' -51.7 NC_004686.1 + 20322 0.67 0.842157
Target:  5'- uCUUCGGCUUCGGGaaaUGCugaaUGGACgGCCGc -3'
miRNA:   3'- -GAAGCUGAAGCCU---GCGc---ACUUG-UGGU- -5'
19689 5' -51.7 NC_004686.1 + 48945 0.7 0.733237
Target:  5'- uCUUUGACaaugCGGAUGCcgGUGAGCACa- -3'
miRNA:   3'- -GAAGCUGaa--GCCUGCG--CACUUGUGgu -5'
19689 5' -51.7 NC_004686.1 + 40104 0.72 0.611629
Target:  5'- uCUUCGGCggccugUCcGA-GCGUGAACGCCGa -3'
miRNA:   3'- -GAAGCUGa-----AGcCUgCGCACUUGUGGU- -5'
19689 5' -51.7 NC_004686.1 + 32152 0.74 0.491839
Target:  5'- -cUCGGCUUucCGGGCGcCGgugagGAACGCCAu -3'
miRNA:   3'- gaAGCUGAA--GCCUGC-GCa----CUUGUGGU- -5'
19689 5' -51.7 NC_004686.1 + 31921 0.97 0.01645
Target:  5'- cCUUCGACUUCGGACG-GUGAACACCAa -3'
miRNA:   3'- -GAAGCUGAAGCCUGCgCACUUGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.