miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19690 3' -45.3 NC_004686.1 + 915 0.66 0.997992
Target:  5'- --gGCCGgcaaAACGuGgGGugUCAUGGUCg -3'
miRNA:   3'- agaUGGU----UUGUuCgCCugAGUAUUAG- -5'
19690 3' -45.3 NC_004686.1 + 45739 0.67 0.995731
Target:  5'- uUCUucaGCCugaguGCGcaacucguuGGCGGugUCGUGGUCc -3'
miRNA:   3'- -AGA---UGGuu---UGU---------UCGCCugAGUAUUAG- -5'
19690 3' -45.3 NC_004686.1 + 24766 0.67 0.995731
Target:  5'- cCUGCCAGACAGGUGcACU-GUGAa- -3'
miRNA:   3'- aGAUGGUUUGUUCGCcUGAgUAUUag -5'
19690 3' -45.3 NC_004686.1 + 40902 0.67 0.99492
Target:  5'- aUCg--CAGACAGGUGGACgCAUGAg- -3'
miRNA:   3'- -AGaugGUUUGUUCGCCUGaGUAUUag -5'
19690 3' -45.3 NC_004686.1 + 51232 0.67 0.993989
Target:  5'- cUCgGCCAucGACAGGCGGGC-CAg---- -3'
miRNA:   3'- -AGaUGGU--UUGUUCGCCUGaGUauuag -5'
19690 3' -45.3 NC_004686.1 + 44972 0.67 0.991718
Target:  5'- aCUGuucUCAGGCAucGGCGGACUCGa---- -3'
miRNA:   3'- aGAU---GGUUUGU--UCGCCUGAGUauuag -5'
19690 3' -45.3 NC_004686.1 + 184 0.68 0.987093
Target:  5'- -gUGCCGGGCGGGUGGGCgacggugcCGUuGUCg -3'
miRNA:   3'- agAUGGUUUGUUCGCCUGa-------GUAuUAG- -5'
19690 3' -45.3 NC_004686.1 + 35114 0.68 0.985175
Target:  5'- --aGCCGuuCAAGCGGuggaugACUCAUGAg- -3'
miRNA:   3'- agaUGGUuuGUUCGCC------UGAGUAUUag -5'
19690 3' -45.3 NC_004686.1 + 17555 0.69 0.980696
Target:  5'- --gGCCAGuugGGGCGGGCUCAguccAUCa -3'
miRNA:   3'- agaUGGUUug-UUCGCCUGAGUau--UAG- -5'
19690 3' -45.3 NC_004686.1 + 18390 0.69 0.975276
Target:  5'- cCUAUCucaGAACAagccAGCGGGCUCGUcGUUg -3'
miRNA:   3'- aGAUGG---UUUGU----UCGCCUGAGUAuUAG- -5'
19690 3' -45.3 NC_004686.1 + 30620 0.74 0.837187
Target:  5'- -gUACCGcaGGCcGGCGGACUCGUggccGAUCu -3'
miRNA:   3'- agAUGGU--UUGuUCGCCUGAGUA----UUAG- -5'
19690 3' -45.3 NC_004686.1 + 42802 0.81 0.46405
Target:  5'- --aGCCAGGCAGGCGGACgccUCAUGAgUCg -3'
miRNA:   3'- agaUGGUUUGUUCGCCUG---AGUAUU-AG- -5'
19690 3' -45.3 NC_004686.1 + 32921 0.97 0.058841
Target:  5'- uUCUACCAAACAAG-GGACUCAUAAUCc -3'
miRNA:   3'- -AGAUGGUUUGUUCgCCUGAGUAUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.