miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19690 5' -63.5 NC_004686.1 + 19352 0.66 0.328642
Target:  5'- ------gCGAGUCgUACCCGUCCCACg -3'
miRNA:   3'- cacccaaGCUCGGgGUGGGCGGGGUG- -5'
19690 5' -63.5 NC_004686.1 + 45890 0.66 0.313675
Target:  5'- aGUGuGGaUUGAgcgGCCCCACCacaGCCUUACc -3'
miRNA:   3'- -CAC-CCaAGCU---CGGGGUGGg--CGGGGUG- -5'
19690 5' -63.5 NC_004686.1 + 26205 0.66 0.313675
Target:  5'- -aGGGUUCcGGUgCCCACUC-CCCCAg -3'
miRNA:   3'- caCCCAAGcUCG-GGGUGGGcGGGGUg -5'
19690 5' -63.5 NC_004686.1 + 44533 0.66 0.299229
Target:  5'- -cGGGcUUGaAGCCCCGCuuGaaCCCCAa -3'
miRNA:   3'- caCCCaAGC-UCGGGGUGggC--GGGGUg -5'
19690 5' -63.5 NC_004686.1 + 10634 0.66 0.299229
Target:  5'- -cGGGUUCGcucGCCCaAUgCGCCCCu- -3'
miRNA:   3'- caCCCAAGCu--CGGGgUGgGCGGGGug -5'
19690 5' -63.5 NC_004686.1 + 52333 0.66 0.297107
Target:  5'- -cGGGUUCGGGCaguuucaacgguucCgCCACCCaCCCgGCc -3'
miRNA:   3'- caCCCAAGCUCG--------------G-GGUGGGcGGGgUG- -5'
19690 5' -63.5 NC_004686.1 + 17273 0.67 0.271895
Target:  5'- cUGGcGUUCcuuCUCCgaaaACCCGCCCCACa -3'
miRNA:   3'- cACC-CAAGcucGGGG----UGGGCGGGGUG- -5'
19690 5' -63.5 NC_004686.1 + 44855 0.67 0.258997
Target:  5'- -gGGGggCGGaucGCCCCACuuGCCgCCu- -3'
miRNA:   3'- caCCCaaGCU---CGGGGUGggCGG-GGug -5'
19690 5' -63.5 NC_004686.1 + 42770 0.72 0.123046
Target:  5'- -cGGGgagCGAuUCCCugguuuCCCGCCCCACg -3'
miRNA:   3'- caCCCaa-GCUcGGGGu-----GGGCGGGGUG- -5'
19690 5' -63.5 NC_004686.1 + 34340 0.74 0.079896
Target:  5'- -cGGaGUUCGAgcgccguccggaGCCgCCGCCCGCgCCCGCg -3'
miRNA:   3'- caCC-CAAGCU------------CGG-GGUGGGCG-GGGUG- -5'
19690 5' -63.5 NC_004686.1 + 38065 0.74 0.077743
Target:  5'- -cGGGUUCaGAaucGCCCCgACCgUGCCCCGCa -3'
miRNA:   3'- caCCCAAG-CU---CGGGG-UGG-GCGGGGUG- -5'
19690 5' -63.5 NC_004686.1 + 32954 1.08 0.000205
Target:  5'- cGUGGGUUCGAGCCCCACCCGCCCCACc -3'
miRNA:   3'- -CACCCAAGCUCGGGGUGGGCGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.