Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19693 | 5' | -53.5 | NC_004686.1 | + | 25776 | 0.66 | 0.791954 |
Target: 5'- -uGAGCAGCCGAaGUgGggaUUCCuCGCa -3' miRNA: 3'- guUUCGUCGGCU-CAgCag-AAGG-GUGa -5' |
|||||||
19693 | 5' | -53.5 | NC_004686.1 | + | 40638 | 0.66 | 0.791954 |
Target: 5'- cCAGGGCGGCCGGGaaCG-CUg-CCACUg -3' miRNA: 3'- -GUUUCGUCGGCUCa-GCaGAagGGUGA- -5' |
|||||||
19693 | 5' | -53.5 | NC_004686.1 | + | 47587 | 0.66 | 0.771736 |
Target: 5'- ------cGUCGAGUCGUUUcUCCCACg -3' miRNA: 3'- guuucguCGGCUCAGCAGA-AGGGUGa -5' |
|||||||
19693 | 5' | -53.5 | NC_004686.1 | + | 33736 | 0.67 | 0.758268 |
Target: 5'- gCAGAGCAGCCuugucgcgagcagaGAGUucggUGUCgagUUCCACg -3' miRNA: 3'- -GUUUCGUCGG--------------CUCA----GCAGa--AGGGUGa -5' |
|||||||
19693 | 5' | -53.5 | NC_004686.1 | + | 1035 | 0.68 | 0.696904 |
Target: 5'- --cGGCGGCugccgguuCGAGUCgGUgUUCCCGCa -3' miRNA: 3'- guuUCGUCG--------GCUCAG-CAgAAGGGUGa -5' |
|||||||
19693 | 5' | -53.5 | NC_004686.1 | + | 49848 | 0.68 | 0.652446 |
Target: 5'- aCAGAGCAGaucggCGAGUgGUaaUUCCCGCa -3' miRNA: 3'- -GUUUCGUCg----GCUCAgCAg-AAGGGUGa -5' |
|||||||
19693 | 5' | -53.5 | NC_004686.1 | + | 19330 | 0.73 | 0.402608 |
Target: 5'- -uGAGCAGCCcucgccgaacucagcGAGUCGUacccgUCCCACg -3' miRNA: 3'- guUUCGUCGG---------------CUCAGCAga---AGGGUGa -5' |
|||||||
19693 | 5' | -53.5 | NC_004686.1 | + | 6540 | 0.76 | 0.282743 |
Target: 5'- ---cGCGGCUGAGUCgGUCUUCCuCGCc -3' miRNA: 3'- guuuCGUCGGCUCAG-CAGAAGG-GUGa -5' |
|||||||
19693 | 5' | -53.5 | NC_004686.1 | + | 37454 | 1.08 | 0.001612 |
Target: 5'- cCAAAGCAGCCGAGUCGUCUUCCCACUa -3' miRNA: 3'- -GUUUCGUCGGCUCAGCAGAAGGGUGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home