Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19694 | 3' | -51.6 | NC_004686.1 | + | 38477 | 1.12 | 0.001905 |
Target: 5'- aCCGGUUCAUCGCCGUCAUCGAAUCCGa -3' miRNA: 3'- -GGCCAAGUAGCGGCAGUAGCUUAGGC- -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 48415 | 0.78 | 0.320601 |
Target: 5'- gCGGUUCGagCGCCG-CAUCGAGUUCa -3' miRNA: 3'- gGCCAAGUa-GCGGCaGUAGCUUAGGc -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 6326 | 0.74 | 0.526715 |
Target: 5'- gCGGccUUCGUCGCCGgcgaGUCGggUuCCGa -3' miRNA: 3'- gGCC--AAGUAGCGGCag--UAGCuuA-GGC- -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 50829 | 0.73 | 0.569785 |
Target: 5'- gCUGGacUUCAaCGCCGacgaCGUCGAAUCCGu -3' miRNA: 3'- -GGCC--AAGUaGCGGCa---GUAGCUUAGGC- -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 6694 | 0.71 | 0.67976 |
Target: 5'- -gGGUUCAguaCGaaGUCAUCGGAuaUCCGg -3' miRNA: 3'- ggCCAAGUa--GCggCAGUAGCUU--AGGC- -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 33710 | 0.71 | 0.70154 |
Target: 5'- aCCGGUgacggUCAUCGCCGcCGgggCGGggCUGa -3' miRNA: 3'- -GGCCA-----AGUAGCGGCaGUa--GCUuaGGC- -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 49210 | 0.7 | 0.764883 |
Target: 5'- cCCGaGUUgAUCGCCGaaGUUGAGcgucUCCGg -3' miRNA: 3'- -GGC-CAAgUAGCGGCagUAGCUU----AGGC- -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 23744 | 0.69 | 0.770986 |
Target: 5'- ----aUCGUCGCCGUCAUCGGGcgcaagaaacuugCCGa -3' miRNA: 3'- ggccaAGUAGCGGCAGUAGCUUa------------GGC- -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 6888 | 0.69 | 0.785022 |
Target: 5'- uUCGcUUCGUCGCaCGUCGguccgUCGggUUCGg -3' miRNA: 3'- -GGCcAAGUAGCG-GCAGU-----AGCuuAGGC- -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 35308 | 0.68 | 0.823297 |
Target: 5'- aCGuGUauUCcuUCGUCGgCAUCGAAUCCGg -3' miRNA: 3'- gGC-CA--AGu-AGCGGCaGUAGCUUAGGC- -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 49699 | 0.68 | 0.832385 |
Target: 5'- aUCGGUUCGUCGCgaccguaGUCGUCcucaCCGg -3' miRNA: 3'- -GGCCAAGUAGCGg------CAGUAGcuuaGGC- -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 343 | 0.68 | 0.841262 |
Target: 5'- -aGGUUCGUcCGUCGUaugUGAAUCCa -3' miRNA: 3'- ggCCAAGUA-GCGGCAguaGCUUAGGc -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 31788 | 0.68 | 0.849918 |
Target: 5'- aCGGUcuUCAU-GCCGUCGUCG-GUCa- -3' miRNA: 3'- gGCCA--AGUAgCGGCAGUAGCuUAGgc -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 7862 | 0.68 | 0.849918 |
Target: 5'- cCCGGUUCgAUC-CCcUCG-CGAGUCCa -3' miRNA: 3'- -GGCCAAG-UAGcGGcAGUaGCUUAGGc -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 2803 | 0.68 | 0.866532 |
Target: 5'- aCCGGUgguggUGUCGaCCGUUccggugcCGGAUCCGg -3' miRNA: 3'- -GGCCAa----GUAGC-GGCAGua-----GCUUAGGC- -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 36348 | 0.68 | 0.866532 |
Target: 5'- uCUGG-UCGaucugCGCCGUCAaagaCGGAUCCa -3' miRNA: 3'- -GGCCaAGUa----GCGGCAGUa---GCUUAGGc -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 38403 | 0.67 | 0.889597 |
Target: 5'- gCCGcugcUCAUCGCCGcgggcaUCAUCGGccCCGg -3' miRNA: 3'- -GGCca--AGUAGCGGC------AGUAGCUuaGGC- -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 31913 | 0.67 | 0.896765 |
Target: 5'- gCCGGUUC--CGUgGUUGUCGcacAUCCGg -3' miRNA: 3'- -GGCCAAGuaGCGgCAGUAGCu--UAGGC- -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 40442 | 0.66 | 0.916647 |
Target: 5'- gCCGua--GUCGCCGaUCAUCG--UCCGg -3' miRNA: 3'- -GGCcaagUAGCGGC-AGUAGCuuAGGC- -5' |
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19694 | 3' | -51.6 | NC_004686.1 | + | 28544 | 0.66 | 0.916648 |
Target: 5'- aCCGGUgcacgaUgAUUGCUugGUUGUUGAAUCCGc -3' miRNA: 3'- -GGCCA------AgUAGCGG--CAGUAGCUUAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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