miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19694 5' -55.2 NC_004686.1 + 2505 0.66 0.783029
Target:  5'- gUCGGAGaUUGACAguGCGAUUGuGGCuGCg -3'
miRNA:   3'- uGGCCUC-AGCUGU--UGCUGGCuCUG-CG- -5'
19694 5' -55.2 NC_004686.1 + 33857 0.66 0.783029
Target:  5'- gGCCGGGGU-GACGcgaaGGCCG-GcCGCg -3'
miRNA:   3'- -UGGCCUCAgCUGUug--CUGGCuCuGCG- -5'
19694 5' -55.2 NC_004686.1 + 1042 0.66 0.783029
Target:  5'- uGCCGGuucgAGUCGguguucccgcACGGCGAUgGAGuCGUg -3'
miRNA:   3'- -UGGCC----UCAGC----------UGUUGCUGgCUCuGCG- -5'
19694 5' -55.2 NC_004686.1 + 27157 0.66 0.773208
Target:  5'- cACUGGAaacCGGuCGGCGACUGGGACa- -3'
miRNA:   3'- -UGGCCUca-GCU-GUUGCUGGCUCUGcg -5'
19694 5' -55.2 NC_004686.1 + 5670 0.66 0.773208
Target:  5'- uCUGGAGcugaUCGAguuCGGCGACCcGGACGg -3'
miRNA:   3'- uGGCCUC----AGCU---GUUGCUGGcUCUGCg -5'
19694 5' -55.2 NC_004686.1 + 2378 0.66 0.773208
Target:  5'- uGCUGGGGUgGACGGguaaGGCUGuuGAUGCu -3'
miRNA:   3'- -UGGCCUCAgCUGUUg---CUGGCu-CUGCG- -5'
19694 5' -55.2 NC_004686.1 + 50031 0.66 0.773208
Target:  5'- cACCGGAucCGGCuuGCGACC-AG-CGCa -3'
miRNA:   3'- -UGGCCUcaGCUGu-UGCUGGcUCuGCG- -5'
19694 5' -55.2 NC_004686.1 + 16641 0.66 0.773208
Target:  5'- uGCCGG-GUau-CAcCGaACCGAGAUGCu -3'
miRNA:   3'- -UGGCCuCAgcuGUuGC-UGGCUCUGCG- -5'
19694 5' -55.2 NC_004686.1 + 185 0.66 0.773208
Target:  5'- uGCCGGgcgGGUgGGCGACGguGCCGuuGuCGCu -3'
miRNA:   3'- -UGGCC---UCAgCUGUUGC--UGGCu-CuGCG- -5'
19694 5' -55.2 NC_004686.1 + 4388 0.66 0.773208
Target:  5'- uUUGGGGUCGAUGAguGCUGAGAUGg -3'
miRNA:   3'- uGGCCUCAGCUGUUgcUGGCUCUGCg -5'
19694 5' -55.2 NC_004686.1 + 16992 0.66 0.773208
Target:  5'- aACgGGGGUCagGAC-ACGGCCGGucauGCGCc -3'
miRNA:   3'- -UGgCCUCAG--CUGuUGCUGGCUc---UGCG- -5'
19694 5' -55.2 NC_004686.1 + 49137 0.66 0.772218
Target:  5'- uCCGGGauugcacguggcuGUUGAUcugcGCGACgGGGACGCc -3'
miRNA:   3'- uGGCCU-------------CAGCUGu---UGCUGgCUCUGCG- -5'
19694 5' -55.2 NC_004686.1 + 17783 0.66 0.763246
Target:  5'- uCCGGGGcCGAUGAUGcCCGcGGCGa -3'
miRNA:   3'- uGGCCUCaGCUGUUGCuGGCuCUGCg -5'
19694 5' -55.2 NC_004686.1 + 36658 0.66 0.763246
Target:  5'- uCCGGcggcGUCGGCGGCGucguaucaACCGgcuccgggguAGGCGCa -3'
miRNA:   3'- uGGCCu---CAGCUGUUGC--------UGGC----------UCUGCG- -5'
19694 5' -55.2 NC_004686.1 + 38574 0.66 0.763246
Target:  5'- cGCUGGAGUCccCGAagGGCCGAucGCGCa -3'
miRNA:   3'- -UGGCCUCAGcuGUUg-CUGGCUc-UGCG- -5'
19694 5' -55.2 NC_004686.1 + 7556 0.66 0.763246
Target:  5'- cCCaGAcGUcacCGACAugGACCG-GugGCa -3'
miRNA:   3'- uGGcCU-CA---GCUGUugCUGGCuCugCG- -5'
19694 5' -55.2 NC_004686.1 + 19558 0.66 0.753154
Target:  5'- cGCCGGAaacgGUUGugGugGGCa-AGACGUu -3'
miRNA:   3'- -UGGCCU----CAGCugUugCUGgcUCUGCG- -5'
19694 5' -55.2 NC_004686.1 + 48021 0.66 0.753154
Target:  5'- uUCGGGGUCGuucgacACGugGGgUGAGGCGa -3'
miRNA:   3'- uGGCCUCAGC------UGUugCUgGCUCUGCg -5'
19694 5' -55.2 NC_004686.1 + 56056 0.67 0.732624
Target:  5'- cGCCuGGcGGuUCGGCAcccGCGACCGGuggacccgcGACGCc -3'
miRNA:   3'- -UGG-CC-UC-AGCUGU---UGCUGGCU---------CUGCG- -5'
19694 5' -55.2 NC_004686.1 + 26241 0.67 0.732624
Target:  5'- aGCCGGGGUCGgugugGCGGCGgcuuGCCGAucaGGCcgaaGCa -3'
miRNA:   3'- -UGGCCUCAGC-----UGUUGC----UGGCU---CUG----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.