Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 19695 | 5' | -62.5 | NC_004686.1 | + | 43689 | 0.66 | 0.318425 |
|
Target: 5'- cUGC-GGCCCAGgaggugGcCCUGCGGgaagugcggGGGUa -3' miRNA: 3'- -ACGuCCGGGUCa-----C-GGACGUCa--------CCCGc -5' |
|||||||
| 19695 | 5' | -62.5 | NC_004686.1 | + | 32021 | 0.66 | 0.318425 |
|
Target: 5'- gUGCGGGCCU----CCUGUugggGGUGGGCc -3' miRNA: 3'- -ACGUCCGGGucacGGACG----UCACCCGc -5' |
|||||||
| 19695 | 5' | -62.5 | NC_004686.1 | + | 40036 | 0.66 | 0.310917 |
|
Target: 5'- cUGCGGuaugugcgacGUCCGGgacgaaUGCCUuCAGUGGGCGc -3' miRNA: 3'- -ACGUC----------CGGGUC------ACGGAcGUCACCCGC- -5' |
|||||||
| 19695 | 5' | -62.5 | NC_004686.1 | + | 43477 | 0.66 | 0.303544 |
|
Target: 5'- cGCAGGUCUucgcgGCgCUGuCGGUGGGUa -3' miRNA: 3'- aCGUCCGGGuca--CG-GAC-GUCACCCGc -5' |
|||||||
| 19695 | 5' | -62.5 | NC_004686.1 | + | 170 | 0.67 | 0.289204 |
|
Target: 5'- gGcCGGGUuggCgGGUGCCggGCgGGUGGGCGa -3' miRNA: 3'- aC-GUCCG---GgUCACGGa-CG-UCACCCGC- -5' |
|||||||
| 19695 | 5' | -62.5 | NC_004686.1 | + | 19184 | 0.69 | 0.193183 |
|
Target: 5'- gGguGcGCCgGGUGCUggugguacgGguGUGGGCGg -3' miRNA: 3'- aCguC-CGGgUCACGGa--------CguCACCCGC- -5' |
|||||||
| 19695 | 5' | -62.5 | NC_004686.1 | + | 13264 | 0.74 | 0.088434 |
|
Target: 5'- cGCcgAGaGCCCGGgGCCUGCGGUGGuGUGc -3' miRNA: 3'- aCG--UC-CGGGUCaCGGACGUCACC-CGC- -5' |
|||||||
| 19695 | 5' | -62.5 | NC_004686.1 | + | 2734 | 0.76 | 0.059834 |
|
Target: 5'- gGCAGG-UguGUGCCUGCuGGUGGGUGg -3' miRNA: 3'- aCGUCCgGguCACGGACG-UCACCCGC- -5' |
|||||||
| 19695 | 5' | -62.5 | NC_004686.1 | + | 38869 | 0.9 | 0.004939 |
|
Target: 5'- gUGCA-GCCgCAGUGCCUGCAGUGGGCGu -3' miRNA: 3'- -ACGUcCGG-GUCACGGACGUCACCCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home