miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19696 3' -53.8 NC_004686.1 + 12503 0.66 0.786917
Target:  5'- aCUUCCCGcAGGGCCaccuccUG-GGCCGCagGCu -3'
miRNA:   3'- -GAAGGGCuUUCUGG------ACgUCGGUGa-CG- -5'
19696 3' -53.8 NC_004686.1 + 13009 0.66 0.766584
Target:  5'- --gCCCGGGacauGGACUUGCAGuUCACgUGUg -3'
miRNA:   3'- gaaGGGCUU----UCUGGACGUC-GGUG-ACG- -5'
19696 3' -53.8 NC_004686.1 + 3531 0.66 0.763482
Target:  5'- ---gCCGAcaaacgccgcguucAGGGCC-GCGGCaCGCUGCa -3'
miRNA:   3'- gaagGGCU--------------UUCUGGaCGUCG-GUGACG- -5'
19696 3' -53.8 NC_004686.1 + 45688 0.66 0.756198
Target:  5'- ---gCCGAAuGAuUCUGgaGGCCACUGCa -3'
miRNA:   3'- gaagGGCUUuCU-GGACg-UCGGUGACG- -5'
19696 3' -53.8 NC_004686.1 + 21798 0.67 0.733975
Target:  5'- -gUCCUagauaggaaugGGAAGACCaaccUGCGGCCuucgagagcgagcGCUGCg -3'
miRNA:   3'- gaAGGG-----------CUUUCUGG----ACGUCGG-------------UGACG- -5'
19696 3' -53.8 NC_004686.1 + 25608 0.67 0.719978
Target:  5'- gUUCCCaacgauggcuGAAAGAaggcaugacaugaCUGCAGCUACUGa -3'
miRNA:   3'- gAAGGG----------CUUUCUg------------GACGUCGGUGACg -5'
19696 3' -53.8 NC_004686.1 + 41339 0.67 0.702546
Target:  5'- --gCCCGA--GACCU-C-GCCGCUGCu -3'
miRNA:   3'- gaaGGGCUuuCUGGAcGuCGGUGACG- -5'
19696 3' -53.8 NC_004686.1 + 22358 0.68 0.691556
Target:  5'- --cCCCGGcccAAGucGCCgucGCAGCC-CUGCa -3'
miRNA:   3'- gaaGGGCU---UUC--UGGa--CGUCGGuGACG- -5'
19696 3' -53.8 NC_004686.1 + 8427 0.68 0.691556
Target:  5'- --cCCCGAAGGGCaaGCc-CCACUGUc -3'
miRNA:   3'- gaaGGGCUUUCUGgaCGucGGUGACG- -5'
19696 3' -53.8 NC_004686.1 + 34072 0.68 0.680507
Target:  5'- -gUgCCGccGAGGCCgcGCGcGCCACUGCu -3'
miRNA:   3'- gaAgGGCu-UUCUGGa-CGU-CGGUGACG- -5'
19696 3' -53.8 NC_004686.1 + 12082 0.68 0.680507
Target:  5'- --gUCUGAucGACCagGCGGCUucuGCUGCg -3'
miRNA:   3'- gaaGGGCUuuCUGGa-CGUCGG---UGACG- -5'
19696 3' -53.8 NC_004686.1 + 25213 0.68 0.651585
Target:  5'- --aCCCGcguGAAGGcCCUGCuuccacugaucgccGCCGCUGCu -3'
miRNA:   3'- gaaGGGC---UUUCU-GGACGu-------------CGGUGACG- -5'
19696 3' -53.8 NC_004686.1 + 13657 0.69 0.624773
Target:  5'- gUUCCCGAGGGAggggugaCUGUgcaguugauucAGCCGCgGCg -3'
miRNA:   3'- gAAGGGCUUUCUg------GACG-----------UCGGUGaCG- -5'
19696 3' -53.8 NC_004686.1 + 24704 0.69 0.624773
Target:  5'- --cCCCGucgucacGAuCCUGCuGCCACUGUu -3'
miRNA:   3'- gaaGGGCuuu----CU-GGACGuCGGUGACG- -5'
19696 3' -53.8 NC_004686.1 + 7495 0.69 0.624773
Target:  5'- aUUCCU---GGGCCUGaaCGGCCGCUGg -3'
miRNA:   3'- gAAGGGcuuUCUGGAC--GUCGGUGACg -5'
19696 3' -53.8 NC_004686.1 + 50734 0.7 0.547264
Target:  5'- -gUUCCGGGuacaGCUUGCGGCC-CUGCg -3'
miRNA:   3'- gaAGGGCUUuc--UGGACGUCGGuGACG- -5'
19696 3' -53.8 NC_004686.1 + 33379 0.7 0.525612
Target:  5'- -cUCCUGuuGAG-CCUGCAGCaACUGUg -3'
miRNA:   3'- gaAGGGCu-UUCuGGACGUCGgUGACG- -5'
19696 3' -53.8 NC_004686.1 + 18630 0.71 0.514908
Target:  5'- -cUCaCCGA---ACCUGguGUCGCUGCu -3'
miRNA:   3'- gaAG-GGCUuucUGGACguCGGUGACG- -5'
19696 3' -53.8 NC_004686.1 + 11120 0.72 0.423257
Target:  5'- -aUgUCGggGGACgUGCGGCCAgUGUu -3'
miRNA:   3'- gaAgGGCuuUCUGgACGUCGGUgACG- -5'
19696 3' -53.8 NC_004686.1 + 39105 1.13 0.00071
Target:  5'- cCUUCCCGAAAGACCUGCAGCCACUGCg -3'
miRNA:   3'- -GAAGGGCUUUCUGGACGUCGGUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.