miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19696 5' -56 NC_004686.1 + 33539 0.66 0.702108
Target:  5'- cGGUuCG-AUGaUGCGGGCCUGC-CGAa -3'
miRNA:   3'- cCCGuGCaUAC-GCGUCUGGACGaGCU- -5'
19696 5' -56 NC_004686.1 + 29574 0.66 0.702108
Target:  5'- aGGCAgCGUcgGCcCGGGCUgcgGUUCGAu -3'
miRNA:   3'- cCCGU-GCAuaCGcGUCUGGa--CGAGCU- -5'
19696 5' -56 NC_004686.1 + 4575 0.66 0.66965
Target:  5'- cGGCGagGUggGCGUAGAugUCUGCUUGGa -3'
miRNA:   3'- cCCGUg-CAuaCGCGUCU--GGACGAGCU- -5'
19696 5' -56 NC_004686.1 + 19017 0.66 0.66965
Target:  5'- uGGGCGaac--GCGUuuGACCUGUUCGGu -3'
miRNA:   3'- -CCCGUgcauaCGCGu-CUGGACGAGCU- -5'
19696 5' -56 NC_004686.1 + 24509 0.66 0.645633
Target:  5'- cGGCGCGgcauacggcgGCGaCGGugCUGCggUCGAa -3'
miRNA:   3'- cCCGUGCaua-------CGC-GUCugGACG--AGCU- -5'
19696 5' -56 NC_004686.1 + 21839 0.68 0.571467
Target:  5'- cGGCGCGg--GCGCGGGCggcgGCUCc- -3'
miRNA:   3'- cCCGUGCauaCGCGUCUGga--CGAGcu -5'
19696 5' -56 NC_004686.1 + 29382 0.68 0.527665
Target:  5'- cGGCAaaccgccagcuguUGUggAUGUgGCGGACCUGUUCGAc -3'
miRNA:   3'- cCCGU-------------GCA--UACG-CGUCUGGACGAGCU- -5'
19696 5' -56 NC_004686.1 + 45994 0.7 0.467035
Target:  5'- cGGCggaaACGgAUGCGCAGACUgcgaggagGCUUGAu -3'
miRNA:   3'- cCCG----UGCaUACGCGUCUGGa-------CGAGCU- -5'
19696 5' -56 NC_004686.1 + 28759 0.7 0.457111
Target:  5'- gGGGCGCGgugAUGCGCGGGuuuuaUGCggCGGg -3'
miRNA:   3'- -CCCGUGCa--UACGCGUCUgg---ACGa-GCU- -5'
19696 5' -56 NC_004686.1 + 14437 0.7 0.457111
Target:  5'- uGGCACGacaugGCGCAcACCaUGCUUGAg -3'
miRNA:   3'- cCCGUGCaua--CGCGUcUGG-ACGAGCU- -5'
19696 5' -56 NC_004686.1 + 19905 0.71 0.382116
Target:  5'- cGGGCACGagaGUGCGC--GCCUGggCGAc -3'
miRNA:   3'- -CCCGUGCa--UACGCGucUGGACgaGCU- -5'
19696 5' -56 NC_004686.1 + 14102 0.71 0.370724
Target:  5'- uGGCACGcugggcuucauccuUGgcgGCGCGGACUUGCUCc- -3'
miRNA:   3'- cCCGUGC--------------AUa--CGCGUCUGGACGAGcu -5'
19696 5' -56 NC_004686.1 + 39145 1.11 0.000632
Target:  5'- uGGGCACGUAUGCGCAGACCUGCUCGAa -3'
miRNA:   3'- -CCCGUGCAUACGCGUCUGGACGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.